<!-- README.md is generated from README.Rmd. Please edit that file --> # BRGenomics <!-- badges: start (versions currently manual...) --> [](https://bioconductor.org/checkResults/release/bioc-LATEST/BRGenomics/) [](https://www.bioconductor.org/packages/BRGenomics) [](http://bioconductor.org/checkResults/devel/bioc-LATEST/BRGenomics/) [](https://github.com/mdeber/BRGenomics) [](https://github.com/mdeber/BRGenomics/commits/master) [](https://bioconductor.org/checkResults/release/bioc-LATEST/BRGenomics/) [](https://codecov.io/gh/mdeber/BRGenomics) <!-- badges: end --> Efficient tools for the analysis of high-resolution genomics data in R. Explore the documentation: <https://mdeber.github.io/> # Installation BRGenomics can be installed directly from Bioconductor: ``` r if (!"BiocManager" %in% installed.packages()) install.packages("BiocManager") BiocManager::install("BRGenomics") ``` Alternatively, the latest development version can be installed from [GitHub](https://github.com/mdeber/BRGenomics): ``` r if (!"remotes" %in% installed.packages()) install.packages("remotes") remotes::install_github("mdeber/BRGenomics") ``` If you install the development version from Github and you’re using Windows, [Rtools for Windows](https://cran.rstudio.com/bin/windows/Rtools/) is required. ## Features See the [documentation website](https://mdeber.github.io/), which includes an introductory vignette, as well as the documentation for currently implemented functions, complete with demonstrative example code. The package currently includes example PRO-seq data^\[1\]. ## Limitations for Windows users - No support for parallel/multicore processing - No support for import bigWig files ------------------------------------------------------------------------ 1. Hojoong Kwak, Nicholas J. Fuda, Leighton J. Core, John T. Lis (2013). Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing. *Science* **339**(6122): 950–953. <https://doi.org/10.1126/science.1229386>