# AlpsNMR <a href="https://sipss.github.io/AlpsNMR"><img src='man/figures/AlpsNMRlogo.png' align="right" width="120" height="139" /></a>
[](https://github.com/sipss/AlpsNMR/actions/)
[](https://codecov.io/github/sipss/AlpsNMR)
[](https://bioconductor.org/checkResults/devel/bioc-LATEST/AlpsNMR/)
[](https://sipss.github.io/AlpsNMR/)
[](https://doi.org/10.1093/bioinformatics/btaa022)
`AlpsNMR` is an R package that can load Bruker and JDX samples as well as
preprocess them.
It includes functions for region exclusion, normalization, peak detection & integration and
outlier detection among others. See the package vignette for details.
## Installation
### Latest release
```r
if (!"BiocManager" %in% rownames(installed.packages()))
install.packages("BiocManager")
BiocManager::install("AlpsNMR")
```
### Development version
```r
if (!"remotes" %in% rownames(installed.packages()))
install.packages("remotes")
remotes::install_github("sipss/AlpsNMR")
```
Quick start
=============
Checkout the [Introduction to AlpsNMR](https://sipss.github.io/AlpsNMR/articles/Vig01-introduction-to-alpsnmr.html) vignette that shows how to import data and preprocess it using `AlpsNMR`. See our [publication](https://doi.org/10.1093/bioinformatics/btaa022) for further details.
See also the [tutorial](https://github.com/sipss/AlpsNMRWorkflow) with a real dataset from beginning to end, including all the steps of untargeted metabolomics analysis.
