Poell authored on 28/01/2021 12:01:22
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+Changes in version 1.9.3 (2021-01-28) |
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+------------------------------------- |
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+ |
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+o Now defaulting to exclude sex chromosomes from model fitting |
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+o Also included sgc argument in twosamplecompare |
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+o Data frame output of ACEcall and twosamplecompare are now restricted to selected chromosomes |
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+ |
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+ |
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Changes in version 1.9.1 (2021-01-15) |
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o accommodating fitting of chromosomes with only a single germline copy (e.g. X and Y in males) |
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-o added the option the specify which cellularities to include in squaremodel |
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+o added the option to specify which cellularities to include in squaremodel |
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o option to save readCounts-object in runACE |
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Poell authored on 15/01/2021 16:16:34
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+Changes in version 1.9.1 (2021-01-15) |
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+------------------------------------- |
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+ |
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+o accommodating fitting of chromosomes with only a single germline copy (e.g. X and Y in males) |
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+o added the option the specify which cellularities to include in squaremodel |
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+o option to save readCounts-object in runACE |
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+ |
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+ |
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Changes in version 1.5.2 (2020-04-14) |
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Poell authored on 14/04/2020 09:03:34
jpoell authored on 14/01/2020 10:51:37
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+Changes in version 1.5.1 (2020-01-14) |
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+------------------------------------- |
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+ |
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+o fixed a bug in getadjustedsegments that joined adjacent chromosomes with same segment values |
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+ |
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+ |
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Changes in version 1.1.2 (2019-04-23) |
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jpoell authored on 23/04/2019 14:13:37
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+Changes in version 1.1.2 (2019-04-23) |
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+------------------------------------- |
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+ |
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+o added citation information! |
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+o fixed bug in getadjustedsegments and twosamplecompare with non-matching NAs |
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+ |
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+ |
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Changes in version 1.1.1 (2018-11-13) |
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jpoell authored on 13/11/2018 13:09:21
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-Changes in version 0.99.8 (2018-09-06) |
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+Changes in version 1.1.1 (2018-11-13) |
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-o bugfix in squaremodelsummary: remove standard in singleplot call |
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+o added forcesegmentsontemplate function |
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+o speed boost by small coding change in model fitting |
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+o added argument in loopsquaremodel to make returning the models optional and flexible (see documentation) |
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Changes in version 0.99.6 (2018-07-26) |
jpoell authored on 06/09/2018 10:28:22
jpoell authored on 26/07/2018 10:30:57
jpoell authored on 28/06/2018 11:20:02
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+Changes in version 0.99.4 (2018-06-26) |
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+------------------------------------- |
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+IMPROVEMENTS |
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+ |
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+ o changed linkmutationdata to linkvariants |
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+ o linkvariants can estimate copies of heterozygous germline variants |
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+ o linkvariants calculates the upper and lower bound of a given confidence level when read depth is given |
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+ o changed postanalysisloop to accommodate linkvariants |
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+ o added argument in runACE to specify genome build |
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+ o several minor documentation amendments |
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+ o improved coding robustness using seq and seq_along functions |
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+ |
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+ |
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Changes in version 0.99.0 (2018-05-24) |
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jpoell authored on 23/05/2018 15:03:10