1. ACE
  2. Graph
Graph of ACE
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  • dcd8f12 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:06:37 -0400;
  • 1b2f96b (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:06:37 -0400;
  • e8bbea7 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:03:07 -0400;
  • 4c6870f (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:03:07 -0400;
  • b290d38 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:08 -0400;
  • 44fa7a7 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:08 -0400;
  • e2900c0 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:50:06 +0000;
  • 5cf2d32 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:50:06 +0000;
  • 7fe0e7c bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:45:46 +0000;
  • 543b422 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:45:46 +0000;
  • 59fed3f bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:36:49 +0000;
  • 791411a (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:36:49 +0000;
  • c047b0a mostly changes to twosamplecompare by Poell <j.poell@amsterdamumc.nl> 2021-01-28 13:01:22 +0100;
  • 9952d0c some accidental omissions fixed by Poell <j.poell@amsterdamumc.nl> 2021-01-15 18:03:26 +0100;
  • 7261ea0 Further accommodate sex chromosomes by Poell <j.poell@amsterdamumc.nl> 2021-01-15 17:16:34 +0100;
  • 8350d50 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:37:13 -0400;
  • 6a04454 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:37:13 -0400;
  • f89d2ab bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:18:09 +0000;
  • 2f6ff56 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:18:09 +0000;
  • bf2fc9f updated e-mail address by Poell <j.poell@amsterdamumc.nl> 2020-04-14 11:03:34 +0200;
  • c31c452 fixed bug in getadjustedsegments by jpoell <j.poell@vumc.nl> 2020-01-14 11:51:37 +0100;
  • 7c75968 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:16 -0400;
  • 246b8d7 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:17 -0400;
  • 8ec75da bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:51 -0400;
  • f4740d2 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:12 -0400;
  • 791a344 oopsie by jpoell <j.poell@vumc.nl> 2019-04-23 16:26:33 +0200;
  • cac736a added citation information and fixed minor bug by jpoell <j.poell@vumc.nl> 2019-04-23 16:13:37 +0200;
  • fc7d88f forcesegmentsontemplate added by jpoell <j.poell@vumc.nl> 2018-11-13 14:09:21 +0100;
  • d8a48de bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:39 -0400;
  • a7e7ae6 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:10 -0400;
  • f86e659 additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:50:08 +0000;
  • e84fd96 updated README.md by jpoell <j.poell@vumc.nl> 2018-09-06 10:49:38 +0000;
  • 19e34bc bug fix squaremodelsummary by jpoell <j.poell@vumc.nl> 2018-09-06 10:28:22 +0000;
  • 0f32bde replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-28 18:50:15 -0400;
  • a00ef0e bug fix linkvariants by jpoell <j.poell@vumc.nl> 2018-07-26 10:30:57 +0000;
  • 0ef86eb Merge branch 'master' of https://github.com/tgac-vumc/ACE by jpoell <j.poell@vumc.nl> 2018-06-28 11:34:27 +0000;
  • ecb290a push version 0.99.5 by jpoell <j.poell@vumc.nl> 2018-06-28 11:32:43 +0000;
  • 30950d7 Delete linkmutationdata.Rd by jpoell <j.poell@vumc.nl> 2018-06-28 09:24:24 +0000;
  • d2eb7c3 push version 0.99.4 by jpoell <j.poell@vumc.nl> 2018-06-28 11:20:02 +0000;
  • eae7b99 @ fix accessory code by jpoell <j.poell@vumc.nl> 2018-06-28 11:16:20 +0000;
  • a8bafae ACE version 0.99.4 by jpoell <j.poell@vumc.nl> 2018-06-28 10:37:57 +0000;
  • f6ca543 export postanalysisloop and replace class() with is() by jpoell <j.poell@vumc.nl> 2018-06-11 13:31:47 +0000;
  • 9b1c4ce R depends 3.4 by jpoell <j.poell@vumc.nl> 2018-06-11 09:42:48 +0000;
  • bcec0bd update R version by jpoell <j.poell@vumc.nl> 2018-05-28 10:52:30 +0000;
  • 2eb3ff4 update R version by jpoell <j.poell@vumc.nl> 2018-05-28 10:52:12 +0000;
  • 3b7b232 remove vignette pdf by jpoell <j.poell@vumc.nl> 2018-05-28 10:47:11 +0000;
  • 8c2fd47 submission updates by jpoell <j.poell@vumc.nl> 2018-05-28 10:46:15 +0000;
  • 3be5e82 undo R requirement by jpoell <j.poell@vumc.nl> 2018-05-24 16:04:17 +0000;
  • 9037a0b require earlier R version by jpoell <j.poell@vumc.nl> 2018-05-24 14:24:38 +0000;
  • 377de67 package check fixes by jpoell <j.poell@vumc.nl> 2018-05-24 14:15:43 +0000;
  • 6e02392 changed available files by jpoell <j.poell@zeus.vumc.nl> 2018-05-23 17:08:36 +0200;
  • 4b45a63 pass checks by jpoell <j.poell@zeus.vumc.nl> 2018-05-23 17:03:10 +0200;
  • bd536ec passes checks by jpoell <j.poell@zeus.vumc.nl> 2018-05-23 17:01:29 +0200;
  • a0ecf41 again by jpoell <j.poell@zeus.vumc.nl> 2018-05-23 11:31:19 +0200;
  • c82046b added html vignette by jpoell <j.poell@zeus.vumc.nl> 2018-05-23 11:29:24 +0200;
  • dec44be require earlier version of R by jpoell <j.poell@vumc.nl> 2018-05-23 08:53:25 +0000;
  • ef0340f Update NAMESPACE by jpoell <j.poell@vumc.nl> 2018-05-22 22:48:06 +0200;
  • aa91574 Update README.md by jpoell <j.poell@vumc.nl> 2018-05-22 22:46:37 +0200;
  • c85e9c3 added pdf vignette by jpoell <j.poell@zeus.vumc.nl> 2018-05-22 16:55:28 +0200;
  • 54a2bc6 removed legacy code by jpoell <j.poell@zeus.vumc.nl> 2018-05-22 16:38:44 +0200;
  • b2979fc added ACE package by jpoell <j.poell@zeus.vumc.nl> 2018-05-22 15:30:12 +0200;
  • 5162cb2 Description by jpoell <j.poell@zeus.vumc.nl> 2018-05-22 15:28:55 +0200;
  • dd3969c standard parameter in singlemodel by jpoell <j.poell@zeus.vumc.nl> 2018-03-19 11:18:13 +0100;
  • 7833102 updated markdown by jpoell <j.poell@zeus.vumc.nl> 2018-02-26 10:28:00 +0100;
  • 2db6835 Remove files in auxillary code by jpoell <j.poell@zeus.vumc.nl> 2018-02-12 14:18:29 +0100;
  • a719971 Merge branch 'master' of https://github.com/tgac-vumc/ACE by jpoell <j.poell@zeus.vumc.nl> 2018-02-12 14:09:08 +0100;
  • 2aedc56 fancy new stuff by jpoell <j.poell@zeus.vumc.nl> 2018-02-12 14:08:00 +0100;
  • a2727f9 correlation and SD option by jpoell <j.poell@zeus.vumc.nl> 2018-02-12 13:54:24 +0100;
  • 8fe9ccf Update README.md by jpoell <j.poell@vumc.nl> 2018-01-18 11:40:51 +0000;
  • 704e485 Update ACE.R by jpoell <j.poell@vumc.nl> 2018-01-18 11:39:56 +0000;
  • 7e013b0 exclude chromosomes added by jpoell <j.poell@zeus.vumc.nl> 2018-01-10 12:01:27 +0100;
  • b85da33 make template through regular interval segmentation by jpoell <j.poell@zeus.vumc.nl> 2018-01-10 11:54:54 +0100;
  • 82ebd36 two_sample_compare and model from unsegmented data by jpoell <j.poell@zeus.vumc.nl> 2018-01-10 11:48:16 +0100;
  • f2b330e calculate model without specified chromosomes by jpoell <j.poell@zeus.vumc.nl> 2017-11-29 11:35:34 +0100;
  • a45c979 scaling secondary axis by jpoell <j.poell@zeus.vumc.nl> 2017-11-29 11:34:29 +0100;
  • ae73e94 fix no segments and name secondary axis by jpoell <j.poell@zeus.vumc.nl> 2017-11-28 16:43:03 +0100;
  • 875d659 new stuff by jpoell <j.poell@zeus.vumc.nl> 2017-11-28 14:31:26 +0100;
  • 5e28175 squaremodel has no standard by jpoell <j.poell@zeus.vumc.nl> 2017-11-27 11:47:26 +0100;
  • ed6f8e5 squaremodel has no standard by jpoell <j.poell@zeus.vumc.nl> 2017-11-27 11:47:14 +0100;
  • a43eebc ploidy correction by jpoell <j.poell@zeus.vumc.nl> 2017-11-27 11:13:12 +0100;
  • 6e39c44 ploidy correction by jpoell <j.poell@zeus.vumc.nl> 2017-11-27 11:12:52 +0100;
  • 24401b6 The end is coming\! by jpoell <j.poell@zeus.vumc.nl> 2017-11-27 10:52:49 +0100;
  • 38940ac test by Poell <j.poell@zeus.vumc.nl> 2017-11-16 13:49:20 +0100;
  • 7448fe8 Update squaremodel_accessory_functions.R by jpoell <j.poell@vumc.nl> 2017-11-13 15:37:23 +0000;
  • 8593687 Rename squaremodel_accesory_functions.R to squaremodel_accessory_functions.R by jpoell <j.poell@vumc.nl> 2017-11-13 15:36:48 +0000;
  • 434ef5d Add files via upload by jpoell <j.poell@vumc.nl> 2017-11-06 12:02:40 +0100;
  • 2dc17bc Update README.md by jpoell <j.poell@vumc.nl> 2017-11-06 10:38:41 +0000;
  • 41e0a47 Update README.md by jpoell <j.poell@vumc.nl> 2017-11-06 10:30:08 +0000;
  • e7bf998 Update README.md by jpoell <j.poell@vumc.nl> 2017-11-06 10:29:17 +0000;
  • dbda0f2 Add files via upload by jpoell <j.poell@vumc.nl> 2017-11-06 11:12:41 +0100;
  • e42cf54 Update README.md by jpoell <j.poell@vumc.nl> 2017-10-23 08:35:20 +0000;
  • 7428f1e Update README.md by jpoell <j.poell@vumc.nl> 2017-10-23 08:34:17 +0000;
  • 9cd1231 Update README.md by jpoell <j.poell@vumc.nl> 2017-10-23 08:30:45 +0000;
  • 482aabb Add files via upload by jpoell <j.poell@vumc.nl> 2017-09-26 10:58:11 +0000;
  • 07a1a6c Delete ACNE_with_RDS.7z by jpoell <j.poell@vumc.nl> 2017-09-26 10:14:57 +0000;
  • 3ee561d Delete ACNE.R by jpoell <j.poell@vumc.nl> 2017-09-26 10:14:45 +0000;
  • 3f10459 Update README.md by jpoell <j.poell@vumc.nl> 2017-09-26 10:13:19 +0000;
  • c61e6f7 Update README.md by jpoell <j.poell@vumc.nl> 2017-09-26 10:11:09 +0000;
  • b8d4d99 Update customplot.R by jpoell <j.poell@vumc.nl> 2017-09-11 12:16:37 +0000;
  • b41bc01 Update loopplots.R by jpoell <j.poell@vumc.nl> 2017-09-11 12:08:04 +0000;