Zero-inflated Negative Binomial based Wanted Variation Extraction (ZINB-WaVE)
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This package implements a zero-inflated negative binomial model for single-cell RNA-seq data, with latent factors.
The model is described in details in the paper:
[D. Risso, F. Perraudeau, S. Gribkova, S. Dudoit and JP. Vert (2018).
A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications.](https://www.nature.com/articles/s41467-017-02554-5)
Since Bioconductor 3.7 the new recommended way to install Bioconductor packages is via the BiocManager package, available on CRAN:
Note that `zinbwave` requires `R (>=3.4)` and `Bioconductor (>=3.6)`.
In virtually all cases, installing from Bioconductor is recommended. However, if you want to install the development version of `zinbwave` from GitHub, you can do so with the following.