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README.md
<img src="man/figures/zellkonverter.png" align="right" alt="zellkonverter logo" width="180" /> # zellkonverter <!-- badges: start --> [![Lifecycle: maturing](https://img.shields.io/badge/lifecycle-maturing-blue.svg)](https://www.tidyverse.org/lifecycle/#maturing) [![Bioconductor since](https://bioconductor.org/shields/years-in-bioc/zellkonverter.svg)](https://bioconductor.org/packages/devel/bioc/html/zellkonverter.html) [![Bioconductor rank](https://bioconductor.org/shields/downloads/devel/zellkonverter.svg)](https://bioconductor.org/packages/devel/bioc/html/zellkonverter.html) [![Codecov test coverage](https://codecov.io/gh/theislab/zellkonverter/branch/master/graph/badge.svg)](https://codecov.io/gh/theislab/zellkonverter?branch=master) <!-- badges: end --> **zellkonverter** is a small package for converting between SingleCellExperiment objects and alternative objects for storing single-cell RNA-sequencing data (such as AnnData). It is built on top of the [**basilisk**][basilisk] package. For documentation see please refer to [Bioconductor][bioc]. Development documentation is also available on [Bioconductor devel][bioc-devel] or the [pkgdown site][pkgdown]. ## Installation **zellkonverter** can be installed from Bioconductor using the **BiocManager** package: ```r if (!requireNamespace("BiocManager", quietly=TRUE)) { install.packages("BiocManager") } BiocManager::install("zellkonverter") ``` ## Build status | Source | Checks | Updated | |:----------------:|:----------------:|:------------:| | [Bioc release](http://bioconductor.org/packages/release/bioc/html/zellkonverter.html) | [![Bioconductor-release Build Status](http://bioconductor.org/shields/build/release/bioc/zellkonverter.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/zellkonverter) | ![](http://bioconductor.org/shields/lastcommit/release/bioc/zellkonverter.svg) | | [Bioc devel](http://bioconductor.org/packages/devel/bioc/html/zellkonverter.html) | [![Bioconductor-devel Build Status](http://bioconductor.org/shields/build/devel/bioc/zellkonverter.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/zellkonverter) | ![](http://bioconductor.org/shields/lastcommit/devel/bioc/zellkonverter.svg) | | [GitHub actions](https://github.com/theislab/zellkonverter/actions) | [![R build status](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions) | ![GitHub last commit](https://img.shields.io/github/last-commit/theislab/zellkonverter) | ## Code of Conduct Please note that the **zellkonverter** project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms. ## Contributors <a href="https://github.com/theislab/zellkonverter/graphs/contributors"> <img src="https://contrib.rocks/image?repo=theislab/zellkonverter" /> </a> Made with [contributors-img](https://contrib.rocks). [basilisk]: https://www.bioconductor.org/packages/basilisk/ "basilisk on Bioconductor" [bioc]: https://bioconductor.org/packages/zellkonverter/ "zellkonverter on Bioconductor" [bioc-devel]: https://bioconductor.org/packages/devel/bioc/html/zellkonverter.html "zellkonverter on Bioconductor devel" [pkgdown]: https://theislab.github.io/zellkonverter/ "zellkonverter pkgdown site"