1. velociraptor
  2. Graph
Graph of velociraptor
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  • d1c9824 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:50:53 -0400;
  • ce32b2f (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 10:50:53 -0400;
  • 2423df6 Add separate environment (untested) for Linux Aarch64. (#95) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-10-11 11:31:05 +0100;
  • e85e0fc Opt in to bs5 template for pkgdown website (#93) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-10-07 11:57:05 +0100;
  • 1dfa82b Update Linux environment to avoid anaconda (#91) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-09-26 14:24:41 +0100;
  • 4ec5297 re-enable plotVelocityStream() with a warning; only test on non-macOS (#89) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-09-13 10:15:44 +0100;
  • 14de4ca Disable plotVelocityStream() (#88) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-09-11 14:43:44 +0100;
  • af016a7 Attempt to fix <a href="#86">#86</a> (#87) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-09-09 14:27:31 +0100;
  • 08a5447 macos fix for github action: downgrade freetype to install 'ragg' and install binary 'units' (#85) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-09-01 06:20:26 +0100;
  • 13f40d2 Fix environment using micromamba for macosx Arm (#84) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-08-30 20:29:30 +0100;
  • 71cca08 Fix conda environment using micromamba for windows (#82) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-08-30 11:06:35 +0100;
  • febb53b Add anaconda to channels for Linux (#81) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-08-29 11:32:15 +0100;
  • dd2bae5 Tested on Linux Ubuntu 24.04 x86_64 (#79) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-08-23 08:37:09 +0100;
  • 209fda9 set version of scvelo triggering the deprecation error to 0.3.1 (#75) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-06-26 14:47:59 +0100;
  • aa520b4 (origin/RELEASE_3_19, RELEASE_3_19) change version used to trigger deprecation error by Kevin Rue <kevinrue@users.noreply.github.com> 2024-06-26 13:49:52 +0100;
  • 7025429 bring in fix from devel by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-06-18 15:09:00 +0100;
  • 1aa2e91 Restore previous scvelo environment for Linux (#74) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-06-18 15:09:00 +0100;
  • 17bccb0 update conda environments and workflows to fix issue similar to devel by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-06-12 10:17:35 +0100;
  • ac10480 Add environment for macOS (Intel) (#72) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-06-01 22:17:25 +0100;
  • ad13b4a update date by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-05-30 09:08:27 +0100;
  • e6f8eb9 Update scvelo to 0.3.2 (#71) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-05-30 09:03:04 +0100;
  • dbc6491 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:27:28 -0400;
  • aa6cc78 bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 11:27:28 -0400;
  • 7c71d63 version bump (#70) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-01-30 12:21:14 +0000;
  • c798bc5 Robust fallback mechanism (#69) by Michael Milton <ttmigueltt@gmail.com> 2024-01-29 23:20:22 +1100;
  • 0883bf4 use r devel by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-01-29 10:41:07 +0000;
  • a14328f use R bioc 3.19 in github action by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2024-01-29 10:24:48 +0000;
  • 4b64c3e bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:25:59 -0400;
  • 05c6c2a (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:25:59 -0400;
  • a1b20fa merge upstream devel by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2023-07-21 13:15:29 +0100;
  • bba3793 version bump (#68) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2023-07-21 13:12:22 +0100;
  • 1604a34 Pin python version (#67) by Charlotte Soneson <charlottesoneson@gmail.com> 2023-07-21 07:41:14 +0200;
  • 5d561c0 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:23:04 -0400;
  • 4553f16 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:23:04 -0400;
  • 3c7d48b Fix segment plot (#65) by Charlotte Soneson <charlottesoneson@gmail.com> 2023-04-03 12:20:52 +0200;
  • aee7bd5 Bugfix + updated GHA (#64) by Charlotte Soneson <charlottesoneson@gmail.com> 2023-02-10 09:52:45 +0100;
  • 7ac0199 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:57 -0400;
  • 97efe6b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:57 -0400;
  • 0ee7651 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:08:47 +0000;
  • 3a7545b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:08:47 +0000;
  • 22bad42 Switch zellkonverter::.AnnDataDependencies to zellkonverter::AnnDataDependencies() (#60) by Charlotte Soneson <charlottesoneson@gmail.com> 2022-04-21 09:57:38 +0200;
  • b1e1ad1 Merge branch 'master' of git.bioconductor.org:packages/velociraptor by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2022-02-04 09:36:53 +0000;
  • 739437d Remove column names of reduced dimension representation (#58) by Charlotte Soneson <charlottesoneson@gmail.com> 2022-02-04 10:36:01 +0100;
  • 7343fc3 Starting with BioC 3.15 + R 4.2, 32-bit Windows is no longer supported so Windows builds are single arch only (i.e. 64-bit only) by Hervé Pagès <hpages.on.github@gmail.com> 2021-12-16 12:42:53 -0800;
  • 2a59b9c add example for scvelo.params argument (#57) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-12-14 10:21:37 +0000;
  • fbca88c bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:03:06 +0000;
  • ca6d3dc (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:03:06 +0000;
  • 635dbaf Add typing extensions (#54) by Charlotte Soneson <charlottesoneson@gmail.com> 2021-10-25 16:34:58 +0200;
  • d61b78d Update github action (#48) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-08-13 13:11:37 +0100;
  • 2dc89ca bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:55:56 +0000;
  • 3e78025 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:55:56 +0000;
  • 3cc70ae Move sanity check vignette to inst/ (#45) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-26 13:24:25 +0000;
  • d7298ef Disable Pkgdown and docker to cache packages on successful run (#44) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-25 16:01:40 +0000;
  • ac6f739 Build and deploy Docker image from GitHub Actions to DockerHub (#43) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-23 10:50:33 +0000;
  • 99b79f4 Use biocthis template for GitHub Actions (#42) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-22 21:44:22 +0000;
  • 9f0ccb0 add Michael Stadler to package authors (#41) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-22 13:31:04 +0000;
  • 6509bc0 Update scvelo.R (#33) by Federico Marini <marinif@uni-mainz.de> 2021-02-22 12:24:10 +0100;
  • 993b235 Add sanity check (pkgdown-enabled) (#37) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-22 09:40:39 +0000;
  • d72ccc5 prepare release 1.1.2 (#38) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-21 19:32:41 +0000;
  • 229fea0 Add plotting functions to visualize RNA velocities (#30) by Michael Stadler <stadler.michael@gmail.com> 2021-02-21 12:55:35 +0100;
  • 0b02342 version bump to refresh cached environment (#36) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2021-02-08 14:08:54 +0000;
  • 7d40eba Minor vignette rewording. by Aaron Lun <lun.aaron@gene.com> 2021-02-03 08:42:38 -0800;
  • 8ec54c1 replace TVTB badges/links with velociraptor ones (#25) by Tim Triche, Jr <tim.triche@gmail.com> 2020-11-17 12:23:05 -0500;
  • 7afbccc Update installation instructions in README (#24) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-11-04 15:18:09 +0000;
  • 105b7c1 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 12:01:39 -0400;
  • 7cd4624 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 12:01:39 -0400;
  • 49fbf28 Convert functions to S4 methods for SCE dispatch, closes #23. Minor variable renaming to avoid confusion. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-10-10 21:48:08 -0700;
  • 4845886 add empty line to force cache update by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-28 17:44:23 +0100;
  • 2c7ac7d 0.99.7 force cache update in attempt to get rid of outdated warning by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-28 17:18:46 +0100;
  • 4ed2f0f 0.99.6 autoscale=FALSE by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-28 16:36:07 +0100;
  • 6c77d82 0.99.5 to trigger new build by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-28 15:32:05 +0100;
  • 1390e18 Update README.md by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-28 15:16:49 +0100;
  • 1af9014 Trigger new build to check whether TIMEOUT issue on Windows is reproducible. (#22) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-21 17:01:43 +0100;
  • d3d6539 Explicitly declare all scvelo dependencies (#21) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-13 23:56:19 +0100;
  • a624b64 Add hexsticker (#20) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-13 10:35:08 +0100;
  • 0315490 version 0.99.1 (#19) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-11 21:52:01 +0100;
  • 81460e2 gitignore Rproj (#18) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-11 21:48:08 +0100;
  • c5816a8 move docker container to the end of the GHA (#17) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-11 09:47:48 +0100;
  • 6d3ffb1 Fix BiocCheck and downsample dataset in vignette (#16) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-09-10 20:52:11 +0100;
  • 4c3c4a1 Manually write and edit sysreq commands in GHA (#15) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-08-28 21:00:15 +0100;
  • 14085e6 Clean up before Bioconductor submission (#14) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-08-25 15:26:45 +0100;
  • 226457f Add some explanations and reference to data to the vignette (#10) by Charlotte Soneson <charlottesoneson@gmail.com> 2020-07-29 21:33:01 +0200;
  • 7c83016 Added some basic tests for embedding functions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-25 23:07:00 -0700;
  • bb34624 Reoxygenated. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-25 22:48:35 -0700;
  • 3cd8eea Added the t-SNE plus embedded arrows into the user's guide. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-25 22:48:16 -0700;
  • 4c5922c Added a utility to compact velocity vectors into a grid. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-25 22:41:39 -0700;
  • 0d6ab0d Added the embedVelocity wrapper, which does what it says. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-25 21:16:21 -0700;
  • 4cfac74 Try installing zellkonverter first. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 22:07:29 -0700;
  • 50dd097 Piggy-back off zellkonverter's dependency list. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 22:04:56 -0700;
  • 7177efa Added vignette and extra Suggests for the demonstration. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 22:00:51 -0700;
  • 851a697 Added zellkonverter to the installation workflow. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 21:16:03 -0700;
  • 8f9ca6f Bugfix for correct SCE dimred passing. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 21:01:47 -0700;
  • 0fee89d Added perfunctory tests for the scvelo pipeline. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 21:01:19 -0700;
  • 5f3e920 Switch to using zellkonverter for AnnData conversion. Minor documentation clean-ups for output description. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-24 20:23:58 -0700;
  • a1b44f2 Fix deployment to gh-pages using latest git (#7) by Kevin Rue-Albrecht <kevinrue67@gmail.com> 2020-06-21 23:10:51 +0100;
  • a4352cd Slight rewording on ambiguous reads. (#6) by Charlotte Soneson <charlottesoneson@gmail.com> 2020-06-16 20:15:23 +0200;
  • d921284 Added Matrix as an Imports. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-16 00:24:28 -0700;
  • 7fdfe2e Reoxygenated, added Charlotte to authors. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-15 23:49:33 -0700;
  • 1b03f83 Minor fixes and cleanup. Fleshed out manual docs. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-15 23:48:56 -0700;
  • 77e0d06 Disambiguate 'x' (argument name) from 'X' (AnnData matrix). by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-06-15 23:27:31 -0700;