1. tweeDEseq
  2. Graph
Graph of tweeDEseq
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  • 21bd627 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:40 -0400;
  • 46792af (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:39 -0400;
  • 3963304 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:29 -0400;
  • 8bd23d4 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:29 -0400;
  • 3902227 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:40 +0000;
  • d74d181 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:40 +0000;
  • 12a2896 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:01:13 +0000;
  • ef3a739 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:01:13 +0000;
  • 5da02fe bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:43 +0000;
  • 375f48a (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:43 +0000;
  • f40740c bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:48 -0400;
  • 0c9d10f (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:48 -0400;
  • acd9484 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:45 +0000;
  • f4ba3f6 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:45 +0000;
  • 6eafeb2 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:00 -0400;
  • f7b17df (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:24 -0400;
  • 2fd7ddf bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:08 -0400;
  • 8654b39 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:33 -0400;
  • 95ffd20 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:53:01 -0500;
  • 7d80bff Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:52:59 -0500;
  • b8cc5b6 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • 9383e7b bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
  • c60a491 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 8e4c982 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:22 -0400;
  • e521ac6 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:13 -0400;
  • bd1fe8e (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:37 -0400;
  • f84c10a bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 4dc60a7 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 911753b bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 6f37ebd bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • cde6b41 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • eaf99cb bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • b79265e bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 6475102 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • e21c39d Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 8bf7373 Solved problem with new version of edgeR by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2016-04-21 10:40:50 +0000;
  • 1b1dcf2 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 8599996 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • f81f483 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 61b2d95 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 68b3db3 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • f9d4688 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 865b581 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 4dd6777 (origin/RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • d37d296 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 367c4f4 fix warning, explicitly return a value from pval() by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:10:45 +0000;
  • 6e313cd Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 4dbe62f (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 469da69 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • a47b69e modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • cae0333 rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 20:22:22 +0000;
  • 12e0bbf bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 7db82c7 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • c636ea3 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • bde9c78 Modified reference in Vignette by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2013-09-13 18:41:44 +0000;
  • 79c3aec (origin/RELEASE_2_12, RELEASE_2_12) Fixed references by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2013-08-29 21:40:22 +0000;
  • 7a6ba38 Added reference for citation by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2013-08-29 21:39:45 +0000;
  • b53eea6 Fixed bug in documentation of normalizeCounts() function by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2013-04-19 10:38:05 +0000;
  • b8b40d9 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 01939fd Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • d39d2b0 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • f523d7a (origin/RELEASE_2_11, RELEASE_2_11) Fixed small bug in tweeDE() by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2013-01-11 15:24:37 +0000;
  • c0a4101 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • 29ed7f6 Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • ab209a0 Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • 6da5bd4 Added exact test by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-09-18 08:31:53 +0000;
  • bc1db51 Version change by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-07-18 13:04:12 +0000;
  • 298f14a (origin/RELEASE_2_10, RELEASE_2_10) Version change by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-07-18 13:03:46 +0000;
  • 437c4fe Replaced prior.n by prior.df in normalizeCounts() by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-07-18 13:02:10 +0000;
  • 4f580f6 Correction of normalizeCounts() man page by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-07-18 13:01:13 +0000;
  • f1e45cb remove null.hypothesis argument from call to edgeR::equalizeLibSizes() by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-06-27 00:42:32 +0000;
  • c980e6b bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 96c4dcc Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • 809fbe8 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • f632db1 Imported normalization method from cqn package by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-19 10:24:26 +0000;
  • 6daa7c1 Fixed bug in documentation by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-15 17:54:01 +0000;
  • 7e1ce90 Fixed bug in glmPT.fit by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-14 09:56:00 +0000;
  • 6106004 Added option so that the user can choose between two different Null Hypothesis when testing for differential expression by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-13 11:32:47 +0000;
  • 8b119d5 Added option for maximum count number in glmPT.fit by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-12 10:33:34 +0000;
  • 7f5ffe6 Added weighted moment estimation by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-09 15:33:51 +0000;
  • 31120d3 More info added to the glmPT man by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-07 17:42:23 +0000;
  • fb24d28 Adapted tweeDEglm and added new sections to the vignette by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-07 17:40:23 +0000;
  • 77b7906 (origin/RELEASE_2_9, RELEASE_2_9) Fixed bug in loglikelihood by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-03-02 16:22:40 +0000;
  • 1b2a509 Fixed bug in loglikelihood by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-02-29 13:06:59 +0000;
  • fcdb534 Corrected manual by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-02-20 10:44:48 +0000;
  • 18b8e87 Corrected references by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-02-16 10:53:56 +0000;
  • ab66133 Corrected references by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-02-16 10:47:29 +0000;
  • cbeae61 Added local regression tool to estimate shape parameter trend by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-02-16 09:41:37 +0000;
  • 16a7b43 Added argument 'a' in tweeDE and testPoissonTweede, which allows fixing the shape parameter during differential expression tests by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-02-13 16:05:27 +0000;
  • cbe4fa2 Migration from multicore to parallel package by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-01-25 10:13:02 +0000;
  • 8cb542e Migration from multicore to parallel by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-01-25 09:52:26 +0000;
  • ec0f0ca Fixed group problem in tweeDE() by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-01-16 16:44:07 +0000;
  • 272cfe8 Fixed group problem in tweeDE() by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-01-16 16:41:28 +0000;
  • f8ed388 Fixed bug in results presentation by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-01-12 16:37:07 +0000;
  • 521252d Fixed bug in results presentation by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2012-01-12 16:36:03 +0000;
  • 7bbb4be Fixed bug in computation of probabilities by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2011-12-30 20:26:50 +0000;
  • b40cf7d Fixed argument control in tweeDE() and testPoissonTweedie() functions by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2011-12-02 15:28:58 +0000;
  • ae6ae02 Fixed argument control in tweeDE() and testPoissonTweedie() functions by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2011-12-02 15:28:44 +0000;
  • 1a11164 Fixed convergence issue by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2011-12-01 13:41:43 +0000;
  • b230f8e Fixed convergence issue by Juan Ramon Gonzalez Ruiz <jrgonzalez@creal.cat> 2011-12-01 13:40:15 +0000;