1. transite
  2. Graph
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  • 5dc4ce0 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) Add news entries by Konstantin Krismer <krismer@mit.edu> 2023-05-05 10:12:07 -0400;
  • f84fc96 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:05:27 -0400;
  • 9d219b2 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:05:27 -0400;
  • 1130f88 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:40 -0400;
  • cfe6354 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:40 -0400;
  • 42bedd9 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:51:39 +0000;
  • 125e0cb (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:51:39 +0000;
  • 98034c4 (origin/RELEASE_3_14, RELEASE_3_14) Bump release version from 1.12.0 to 1.12.1 by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:58:51 -0500;
  • 73c176f Update README by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:50:01 -0500;
  • df195f8 Add news entries by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:49:46 -0500;
  • 53debb8 Fix Bioconductor platform badge by Konstantin Krismer <krismer@mit.edu> 2021-05-21 15:12:58 -0400;
  • a126043 Fix typo by Konstantin Krismer <krismer@mit.edu> 2021-05-20 14:20:12 -0400;
  • 9ccbe43 Migrate from travis-ci.org to travis-ci.com by Konstantin Krismer <krismer@mit.edu> 2020-10-29 13:19:46 -0400;
  • bd60964 Update version in README by Konstantin Krismer <krismer@mit.edu> 2020-10-29 12:45:43 -0400;
  • 302b4d1 Add news entry for 1.8.0 by Konstantin Krismer <krismer@mit.edu> 2020-10-29 12:42:47 -0400;
  • 0fda35c Bump devel version from 1.13.0 to 1.13.1 by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:50:24 -0500;
  • 2a8edab Update README by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:50:01 -0500;
  • 7291d83 Add news entries by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:49:46 -0500;
  • 652b792 Merge branch 'master' of git.bioconductor.org:packages/transite by Konstantin Krismer <krismer@mit.edu> 2021-11-13 09:41:45 -0500;
  • bf9ff77 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:47:34 +0000;
  • e8bef61 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:47:34 +0000;
  • 2e69b44 Fix Bioconductor platform badge by Konstantin Krismer <krismer@mit.edu> 2021-05-21 15:12:58 -0400;
  • 1cc9e29 Fix typo by Konstantin Krismer <krismer@mit.edu> 2021-05-20 14:20:12 -0400;
  • 0453887 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:38:51 +0000;
  • 84f24a9 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:38:51 +0000;
  • 9f50c01 (origin/RELEASE_3_12, RELEASE_3_12) Migrate from travis-ci.org to travis-ci.com by Konstantin Krismer <krismer@mit.edu> 2020-10-29 13:19:46 -0400;
  • ea66ffa Migrate from travis-ci.org to travis-ci.com by Konstantin Krismer <krismer@mit.edu> 2020-10-29 13:19:46 -0400;
  • ae7d3a7 Update version in README by Konstantin Krismer <krismer@mit.edu> 2020-10-29 12:45:43 -0400;
  • ccda831 Add news entry for 1.8.0 by Konstantin Krismer <krismer@mit.edu> 2020-10-29 12:42:47 -0400;
  • 2e85311 Update version in README by Konstantin Krismer <krismer@mit.edu> 2020-10-29 12:45:43 -0400;
  • 9b67662 Add news entry for 1.8.0 by Konstantin Krismer <krismer@mit.edu> 2020-10-29 12:42:47 -0400;
  • 2d433f0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:39:43 -0400;
  • dd0c616 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:39:43 -0400;
  • bb049df Bump devel version to 1.7.3 by Konstantin Krismer <krismer@mit.edu> 2020-10-23 11:40:46 -0400;
  • a1d2f37 Require Rcpp >= 1.0.4.8 by Konstantin Krismer <krismer@mit.edu> 2020-10-23 11:40:26 -0400;
  • 4ad7f3f Update version in README by Konstantin Krismer <krismer@mit.edu> 2020-10-23 11:33:37 -0400;
  • 2da27a4 Add news entry for 1.6.3 by Konstantin Krismer <krismer@mit.edu> 2020-10-23 11:32:14 -0400;
  • 29efba5 Replace Rcpp::RcppArmadillo::sample() with now fixed Rcpp::sample() by Konstantin Krismer <krismer@mit.edu> 2020-10-23 11:29:57 -0400;
  • 55adc18 Add limits argument for spectrum plots by Konstantin Krismer <krismer@mit.edu> 2020-10-23 11:28:42 -0400;
  • 9c0945c Fix DOI link by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:25:39 -0400;
  • 58cc457 Update DOI by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:23:59 -0400;
  • 487aea9 (origin/RELEASE_3_11, RELEASE_3_11) Bump release version from 1.6.1 to 1.6.2 by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:18:31 -0400;
  • fa95876 Update version in README by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:11:04 -0400;
  • aef4f8d Increment Roxygen2 version by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:09:02 -0400;
  • 06dff2f Add news entry for 1.6.2 by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:08:32 -0400;
  • 441ac94 Update paper reference by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:05:46 -0400;
  • 7b803c3 Fix formatting issue in function doc by Konstantin Krismer <krismer@mit.edu> 2020-06-21 17:41:24 -0400;
  • 6c199b6 Increment year by Konstantin Krismer <krismer@mit.edu> 2020-06-21 17:40:51 -0400;
  • d21f4c4 Update version in README by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:11:04 -0400;
  • b32c289 Bump devel version from 1.7.1 to 1.7.2 by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:09:42 -0400;
  • 5449671 Increment Roxygen2 version by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:09:02 -0400;
  • f4d0ff4 Add news entry for 1.6.2 by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:08:32 -0400;
  • 2680a88 Update paper reference by Konstantin Krismer <krismer@mit.edu> 2020-08-25 11:05:46 -0400;
  • f283e8f Fix formatting issue in function doc by Konstantin Krismer <krismer@mit.edu> 2020-06-21 17:41:24 -0400;
  • 570e030 Increment year by Konstantin Krismer <krismer@mit.edu> 2020-06-21 17:40:51 -0400;
  • 0bd91aa Fix typo by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:25:19 -0400;
  • cb89b75 Fix typo by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:25:19 -0400;
  • ee68224 Bump release version to 1.6.1 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:20:30 -0400;
  • f44f8e5 Fix formatting issue by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:15:59 -0400;
  • 984539f Add news section for 1.6.0 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:14:59 -0400;
  • 9330500 Adjust README.md to Bioconductor 3.11 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:07:11 -0400;
  • 2980f23 Fix roxygen annotation for package data by Konstantin Krismer <krismer@mit.edu> 2020-05-03 15:55:42 -0400;
  • ba3c840 Bump devel version to 1.7.1 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:16:29 -0400;
  • 0dd3bf0 Fix formatting issue by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:15:59 -0400;
  • 7605af9 Add news section for 1.6.0 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:14:59 -0400;
  • 7c08ebf Adjust README.md to Bioconductor 3.11 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 16:07:11 -0400;
  • 436b471 Fix roxygen annotation for package data by Konstantin Krismer <krismer@mit.edu> 2020-05-03 15:55:42 -0400;
  • e9e5203 Merge branch 'master' of git.bioconductor.org:packages/transite by Konstantin Krismer <krismer@mit.edu> 2020-05-03 13:10:16 -0400;
  • 62f24d5 Merge branch 'RELEASE_3_11' of git.bioconductor.org:packages/transite into RELEASE_3_11 by Konstantin Krismer <krismer@mit.edu> 2020-05-03 11:44:36 -0400;
  • 57d2c4c bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:20:37 +0000;
  • 671859b bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:20:37 +0000;
  • 2f5c13f Use Rcpp::RcppArmadillo::sample() instead of Rcpp::sample() to avoid memory leak by Konstantin Krismer <krismer@mit.edu> 2020-04-25 00:21:38 -0400;
  • 0df0c99 Improve efficiency of transcript set shuffling by Konstantin Krismer <krismer@mit.edu> 2020-04-24 18:07:55 -0400;
  • 1b988b6 Fix issue due to floating point machine precision by Konstantin Krismer <krismer@mit.edu> 2020-04-24 11:39:17 -0400;
  • dd3ba45 Add transcript values and value label params to SPMA functions by Konstantin Krismer <krismer@mit.edu> 2020-04-23 14:07:56 -0400;
  • fb56b4b Add spectrum plot unit tests by Konstantin Krismer <krismer@mit.edu> 2020-04-23 13:44:34 -0400;
  • 4cd5bc6 Add transcript values overlay by Konstantin Krismer <krismer@mit.edu> 2020-04-23 13:44:12 -0400;
  • 42cf9c5 Replace R.devices::suppressGraphics with grDevices::pdf(NULL) by Konstantin Krismer <krismer@mit.edu> 2020-04-18 22:43:50 -0400;
  • 9e2194e Skip multi-threaded unit test on i386 architecture by Konstantin Krismer <krismer@mit.edu> 2020-04-18 22:24:09 -0400;
  • 021a79c Stop cluster after parLapply by Konstantin Krismer <krismer@mit.edu> 2020-04-18 22:23:24 -0400;
  • 6c2320c Add k-mer-based unit tests by Konstantin Krismer <krismer@mit.edu> 2020-04-18 19:12:56 -0400;
  • f9fe5cb Add tests with various max_hits values by Konstantin Krismer <krismer@mit.edu> 2020-04-18 18:02:22 -0400;
  • 472d944 Remove unused C++ functions by Konstantin Krismer <krismer@mit.edu> 2020-04-18 17:24:58 -0400;
  • 7ee4d97 Add tests for matrix-based functions by Konstantin Krismer <krismer@mit.edu> 2020-04-18 17:11:57 -0400;
  • 4cb4029 Add tests for misc functions by Konstantin Krismer <krismer@mit.edu> 2020-04-18 16:47:17 -0400;
  • 8eab800 Fix issue with uninitialized IUPAC table by Konstantin Krismer <krismer@mit.edu> 2020-04-18 16:46:49 -0400;
  • 14062d4 Add tests for main functions by Konstantin Krismer <krismer@mit.edu> 2020-04-18 14:37:00 -0400;
  • 00951b6 Suppress graphics device by Konstantin Krismer <krismer@mit.edu> 2020-04-18 14:34:15 -0400;
  • 0aa856b Fix issue with cached and uncached sequences by Konstantin Krismer <krismer@mit.edu> 2020-04-18 13:36:16 -0400;
  • 3879b7d Add combine p-value tests by Konstantin Krismer <krismer@mit.edu> 2020-04-18 12:02:52 -0400;
  • 6f82f81 Enable coveralls by Konstantin Krismer <krismer@mit.edu> 2020-04-18 12:02:27 -0400;
  • 7373ff6 Add installation section by Konstantin Krismer <krismer@mit.edu> 2020-04-03 11:14:10 -0400;
  • 95ba3d2 Change method names to adhere to tidyverse style guide by Konstantin Krismer <krismer@mit.edu> 2020-04-03 03:36:40 -0400;
  • f1b8e5a Change function names to adhere to tidyverse style guide by Konstantin Krismer <krismer@mit.edu> 2020-04-03 02:26:07 -0400;
  • ccadcce Change variable names to adhere to tidyverse style guide by Konstantin Krismer <krismer@mit.edu> 2020-04-03 01:06:43 -0400;
  • c8ddca0 (origin/RELEASE_3_10, RELEASE_3_10) Adjust README.md to Bioconductor 3.10 by Konstantin Krismer <krismer@mit.edu> 2019-11-04 18:37:07 -0500;
  • 068e8c5 Build on Travis-CI using bioc-release branch by Konstantin Krismer <krismer@mit.edu> 2019-11-04 18:34:41 -0500;
  • 225200e Adjust README.md to Bioconductor 3.10 by Konstantin Krismer <krismer@mit.edu> 2019-11-04 18:37:07 -0500;
  • 52ef7e2 Build on Travis-CI using bioc-release branch by Konstantin Krismer <krismer@mit.edu> 2019-11-04 18:34:41 -0500;
  • 2f04324 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:21 -0400;