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README.md
# topdownr <!-- badges: start --> [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![build status](https://github.com/sgibb/topdownr/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/sgibb/topdownr/actions) [![codecov.io](https://img.shields.io/codecov/c/github/sgibb/topdownr.svg?branch=master)](https://codecov.io/github/sgibb/topdownr/?branch=master) [![license](https://img.shields.io/badge/license-GPL%20%28%3E=%203%29-brightgreen.svg?style=flat)](https://www.gnu.org/licenses/gpl-3.0.html) [![years in bioc](https://bioconductor.org/shields/years-in-bioc/topdownr.svg)](https://bioconductor.org/packages/release/bioc/html/topdownr.html) [![bioc downloads](https://bioconductor.org/shields/downloads/topdownr.svg)](https://bioconductor.org/packages/stats/bioc/topdownr/) Release: [![build release](https://bioconductor.org/shields/build/release/bioc/topdownr.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/topdownr/) Devel: [![build devel](https://bioconductor.org/shields/build/devel/bioc/topdownr.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/topdownr/) <!-- badges: end --> ## Installation ```r if (!require("BiocManager")) install.packages("BiocManager") BiocManager::install("topdownr") ``` If you want to install the development version from github (not recommended unless you know what you are doing): ```r if (!require("BiocManager")) install.packages("BiocManager") BiocManager::install("sgibb/topdownr") ``` ## Documentation To get started: ```r ?"topdownr-package" vignette("data-generation", package="topdownr") vignette("analysis", package="topdownr") ``` Development documentation: https://sgibb.github.io/topdownr/ ## Questions General questions should be asked on the [Bioconductor support forum](https://support.bioconductor.org/), using `topdownr` to tag the question. Feel also free to open a GitHub [issue](https://github.com/sgibb/topdownr/issues), in particular for bug reports. ## Contribution See [CONTRIBUTING.md](CONTRIBUTING.md). ## Support See [SUPPORT.md](SUPPORT.md).