Package: tomoseqr
Title: R Package for Analyzing Tomo-seq Data
Version: 1.7.0
Authors@R:
    person(
        given = "Ryosuke",
        family = "Matsuzawa",
        role = c("aut", "cre"),
        email = "kinakomochi.work@gmail.com",
        comment = c(ORCID = "0000-0003-2999-4734")
    )
Description: `tomoseqr` is an R package for analyzing Tomo-seq data.
    Tomo-seq is a genome-wide RNA tomography method that combines combining
    high-throughput RNA sequencing with cryosectioning for spatially resolved transcriptomics.
    `tomoseqr` reconstructs 3D expression patterns from tomo-seq data
    and visualizes the reconstructed 3D expression patterns.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
VignetteBuilder: knitr
Depends:
    R (>= 4.2)
biocViews: GeneExpression, Sequencing, RNASeq, Transcriptomics,
        Spatial, Visualization, Software
Imports:
    grDevices,
    graphics,
    animation,
    tibble,
    dplyr,
    stringr,
    purrr,
    methods,
    shiny,
    BiocFileCache,
    readr,
    tools,
    plotly,
    ggplot2
Suggests:
    rmarkdown,
    knitr,
    BiocStyle,
    testthat (>= 3.0.0)
Config/testthat/edition: 3