# Generated by roxygen2: do not edit by hand S3method(add_count,SingleCellExperiment) S3method(arrange,SingleCellExperiment) S3method(as_tibble,SingleCellExperiment) S3method(bind_cols,SingleCellExperiment) S3method(bind_rows,SingleCellExperiment) S3method(count,SingleCellExperiment) S3method(distinct,SingleCellExperiment) S3method(extract,SingleCellExperiment) S3method(filter,SingleCellExperiment) S3method(full_join,SingleCellExperiment) S3method(ggplot,SingleCellExperiment) S3method(glimpse,tidySingleCellExperiment) S3method(group_by,SingleCellExperiment) S3method(inner_join,SingleCellExperiment) S3method(join_transcripts,Seurat) S3method(join_transcripts,default) S3method(left_join,SingleCellExperiment) S3method(mutate,SingleCellExperiment) S3method(nest,SingleCellExperiment) S3method(pivot_longer,SingleCellExperiment) S3method(plot_ly,SingleCellExperiment) S3method(print,SingleCellExperiment) S3method(pull,SingleCellExperiment) S3method(rename,SingleCellExperiment) S3method(right_join,SingleCellExperiment) S3method(rowwise,SingleCellExperiment) S3method(sample_frac,SingleCellExperiment) S3method(sample_n,SingleCellExperiment) S3method(select,SingleCellExperiment) S3method(separate,SingleCellExperiment) S3method(slice,SingleCellExperiment) S3method(slice_head,SingleCellExperiment) S3method(slice_max,SingleCellExperiment) S3method(slice_min,SingleCellExperiment) S3method(slice_sample,SingleCellExperiment) S3method(slice_tail,SingleCellExperiment) S3method(summarise,SingleCellExperiment) S3method(summarize,SingleCellExperiment) S3method(tbl_format_header,tidySingleCellExperiment) S3method(tidy,SingleCellExperiment) S3method(unite,SingleCellExperiment) S3method(unnest,tidySingleCellExperiment_nested) export("%>%") export(join_transcripts) export(tidy) export(unnest_single_cell_experiment) exportMethods(aggregate_cells) exportMethods(join_features) importFrom(Matrix,rowSums) importFrom(S4Vectors,"metadata<-") importFrom(S4Vectors,DataFrame) importFrom(S4Vectors,metadata) importFrom(S4Vectors,split) importFrom(SingleCellExperiment,cbind) importFrom(SingleCellExperiment,reducedDims) importFrom(SummarizedExperiment,"assays<-") importFrom(SummarizedExperiment,"colData<-") importFrom(SummarizedExperiment,assay) importFrom(SummarizedExperiment,assayNames) importFrom(SummarizedExperiment,assays) importFrom(SummarizedExperiment,colData) importFrom(dplyr,add_count) importFrom(dplyr,any_of) importFrom(dplyr,arrange) importFrom(dplyr,contains) importFrom(dplyr,count) importFrom(dplyr,distinct) importFrom(dplyr,distinct_at) importFrom(dplyr,everything) importFrom(dplyr,filter) importFrom(dplyr,full_join) importFrom(dplyr,group_by) importFrom(dplyr,group_by_drop_default) importFrom(dplyr,group_split) importFrom(dplyr,inner_join) importFrom(dplyr,left_join) importFrom(dplyr,mutate) importFrom(dplyr,pull) importFrom(dplyr,rename) importFrom(dplyr,right_join) importFrom(dplyr,rowwise) importFrom(dplyr,sample_frac) importFrom(dplyr,sample_n) importFrom(dplyr,select) importFrom(dplyr,slice) importFrom(dplyr,slice_head) importFrom(dplyr,slice_max) importFrom(dplyr,slice_min) importFrom(dplyr,slice_sample) importFrom(dplyr,slice_tail) importFrom(dplyr,summarise) importFrom(dplyr,summarize) importFrom(dplyr,vars) importFrom(ellipsis,check_dots_used) importFrom(fansi,strwrap_ctl) importFrom(ggplot2,aes) importFrom(ggplot2,ggplot) importFrom(lifecycle,deprecate_warn) importFrom(magrittr,"%$%") importFrom(magrittr,"%>%") importFrom(magrittr,equals) importFrom(magrittr,set_rownames) importFrom(methods,getMethod) importFrom(methods,is) importFrom(pillar,align) importFrom(pillar,get_extent) importFrom(pillar,style_subtle) importFrom(pillar,tbl_format_header) importFrom(pkgconfig,get_config) importFrom(purrr,as_mapper) importFrom(purrr,imap) importFrom(purrr,map) importFrom(purrr,map2) importFrom(purrr,map_chr) importFrom(purrr,reduce) importFrom(purrr,when) importFrom(rlang,":=") importFrom(rlang,dots_values) importFrom(rlang,enexpr) importFrom(rlang,enquo) importFrom(rlang,enquos) importFrom(rlang,expr) importFrom(rlang,flatten_if) importFrom(rlang,is_spliced) importFrom(rlang,names2) importFrom(rlang,quo_is_null) importFrom(rlang,quo_is_symbol) importFrom(rlang,quo_is_symbolic) importFrom(rlang,quo_name) importFrom(rlang,quo_squash) importFrom(stats,setNames) importFrom(stringr,regex) importFrom(stringr,str_c) importFrom(stringr,str_detect) importFrom(stringr,str_remove) importFrom(stringr,str_replace_all) importFrom(stringr,str_subset) importFrom(tibble,as_tibble) importFrom(tibble,enframe) importFrom(tibble,glimpse) importFrom(tibble,rowid_to_column) importFrom(tidyr,extract) importFrom(tidyr,nest) importFrom(tidyr,pivot_longer) importFrom(tidyr,separate) importFrom(tidyr,spread) importFrom(tidyr,unite) importFrom(tidyr,unnest) importFrom(tidyselect,eval_select) importFrom(ttservice,aggregate_cells) importFrom(ttservice,bind_cols) importFrom(ttservice,bind_rows) importFrom(ttservice,join_features) importFrom(ttservice,plot_ly) importFrom(utils,data) importFrom(utils,packageDescription) importFrom(utils,tail) importFrom(vctrs,new_data_frame)