Package: tanggle
Type: Package
Title: Visualization of Phylogenetic Networks
Version: 1.9.0
Authors@R: c(person("Klaus", "Schliep", email="klaus.schliep@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2941-0161")),
             person("Marta", "Vidal-Garcia", role="aut"), 
             person("Claudia", "Solis-Lemus", role="aut", 
    email="solislemus@wisc.edu", comment = c(ORCID = "0000-0002-9789-8915")), 
             person("Leann", "Biancani", role="aut"), 
             person("Eren", "Ada", role="aut"), 
             person("L. Francisco", "Henao Diaz", role="aut"), 
             person("Guangchuang", "Yu", role = c("ctb")))
Description: Offers functions for plotting split  (or implicit) networks 
    (unrooted, undirected) and explicit networks (rooted, directed) with 
    reticulations extending. 'ggtree' and using functions from 'ape' and 
    'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the 
    visualization of phylogenetic networks using the 'ggplot2' syntax. It offers
    an alternative to the plot functions already available in 'ape' Paradis and
    Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep 
    (2011) <doi:10.1093/bioinformatics/btq706>.
Depends:
    R (>= 4.1),
    ggplot2 (>= 2.2.0),
    ggtree
Imports:
    ape (>= 5.0), 
    phangorn (>= 2.5),
    utils,
    methods
Suggests:
    tinytest,
    BiocStyle,
    ggimage,
    knitr,
    rmarkdown
VignetteBuilder: knitr    
biocViews: Software, Visualization, Phylogenetics, Alignment, Clustering, 
    MultipleSequenceAlignment, DataImport
License: Artistic-2.0
URL: https://klausvigo.github.io/tanggle, https://github.com/KlausVigo/tanggle
BugReports: https://github.com/KlausVigo/tanggle/issues
RoxygenNote: 7.1.2
Roxygen: list(old_usage = TRUE)