git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tRanslatome@107610 bc3139a8-67e5-0310-9ffc-ced21a209358
Erik Dassi authored on 20/08/2015 08:42:52
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@@ -1,8 +1,8 @@ |
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Package: tRanslatome |
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Type: Package |
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Title: Comparison between multiple levels of gene expression |
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-Version: 1.7.0 |
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-Date: 2015-01-28 |
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+Version: 1.7.1 |
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+Date: 2015-08-20 |
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Author: Toma Tebaldi, Erik Dassi, Galena Kostoska |
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Maintainer: Toma Tebaldi <tebaldi@science.unitn.it>, Erik Dassi <erik.dassi@unitn.it> |
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Depends: R (>= 2.15.0), methods, limma, sigPathway, samr, anota, DESeq, |
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@@ -14,4 +14,4 @@ LazyLoad: yes |
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biocViews: CellBiology, GeneRegulation, Regulation, GeneExpression, |
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DifferentialExpression, Microarray, HighThroughputSequencing, |
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QualityControl, GO, MultipleComparisons, Bioinformatics |
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-Packaged: 2015-01-29 13:48:55 UTC; toma |
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+Packaged: 2015-08-20 08:48:55 UTC; toma |
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@@ -624,9 +624,9 @@ setMethod("RegulatoryEnrichment", "DEGs",
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} |
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else {
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enriched.1 <- computeGeneListEnrichment(genes.1stlevel, |
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- label.level.DEGs[1], significance.threshold, mult.cor, regulated.identities=NULL, regulated.counts=NULL) |
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+ label.level.DEGs[1], significance.threshold, mult.cor, regulated.identities, regulated.counts) |
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enriched.2 <- computeGeneListEnrichment(genes.2ndlevel, |
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- label.level.DEGs[2], significance.threshold, mult.cor, regulated.identities=NULL, regulated.counts=NULL) |
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+ label.level.DEGs[2], significance.threshold, mult.cor, regulated.identities, regulated.counts) |
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return(new("EnrichedSets", enriched.table=rbind(enriched.1, enriched.2),
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label.level.enriched=label.level.DEGs)) |