git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/tRanslatome@121673 bc3139a8-67e5-0310-9ffc-ced21a209358
Erik Dassi authored on 03/10/2016 14:39:17
| ... | ... |
@@ -364,8 +364,7 @@ comparisonBetweenTwoLists <- function(go1,go2,ontology,direction) {
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| 364 | 364 |
for (i in 1:nrow(go1)) {
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| 365 | 365 |
mat <- NULL |
| 366 | 366 |
for (j in 1:nrow(go2)) {
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| 367 |
- sim <- goSim(go1[i, 1], go2[j, 1], |
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| 368 |
- organism="human", measure="Wang", ont = ontology) |
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| 367 |
+ sim <- goSim(go1[i, 1], go2[j, 1], measure="Wang") |
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| 369 | 368 |
mat <- rbind(mat, c(go1[i, 1],go1[i, 2],go2[j, 1],go2[j, 2],sim)) |
| 370 | 369 |
} |
| 371 | 370 |
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