| ... | ... |
@@ -1,8 +1,8 @@ |
| 1 | 1 |
Package: tRanslatome |
| 2 | 2 |
Type: Package |
| 3 | 3 |
Title: Comparison between multiple levels of gene expression |
| 4 |
-Version: 1.37.2 |
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| 5 |
-Date: 2020-11-26 |
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| 4 |
+Version: 1.37.4 |
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| 5 |
+Date: 2023-02-02 |
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| 6 | 6 |
Author: Toma Tebaldi, Erik Dassi, Galena Kostoska |
| 7 | 7 |
Maintainer: Toma Tebaldi <tebaldi@science.unitn.it>, Erik Dassi <erik.dassi@unitn.it> |
| 8 | 8 |
Depends: R (>= 2.15.0), methods, limma, anota, DESeq2, |
| ... | ... |
@@ -13,6 +13,10 @@ import(methods) |
| 13 | 13 |
import(org.Hs.eg.db) |
| 14 | 14 |
importFrom(plotrix, radial.plot) |
| 15 | 15 |
import(topGO) |
| 16 |
+importFrom("grDevices", "dev.off", "jpeg", "pdf", "png", "postscript")
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| 17 |
+importFrom("graphics", "abline", "barplot", "layout", "legend", "mtext", "par", "points", "text")
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| 18 |
+importFrom("stats", "cor.test", "fisher.test", "model.matrix", "p.adjust", "sd")
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|
| 19 |
+importFrom("utils", "data", "head", "str")
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|
| 16 | 20 |
export(newTranslatomeDataset, computeDEGs, getExprMatrix, getConditionA, getConditionB, getConditionC, getConditionD, getDataType, getConditionLabels, getLevelLabels, getDEGs) |
| 17 | 21 |
export(Histogram, Scatterplot, MAplot, SDplot, CVplot, GOEnrichment, RegulatoryEnrichment, DEGs.table, getDEGsMethod, significance.threshold, FC.threshold, label.level.DEGs, label.condition) |
| 18 | 22 |
export(Radar, Heatmap, enriched.table, label.level.enriched) |
