Name Mode Size
..
AllGenerics.R 100644 0 kb
tRNAdbImport-checks.R 100644 2 kb
tRNAdbImport-import.R 100644 27 kb
tRNAdbImport-open.R 100644 1 kb
tRNAdbImport.R 100644 2 kb
utils.R 100644 0 kb
README.md
# tRNAdbImport <img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/tRNA/tRNA.png" height="200" align="right"> <!-- badges: start --> [![R-CMD-check](https://github.com/FelixErnst/tRNAdbImport/workflows/R-CMD-check/badge.svg)](https://github.com/FelixErnst/tRNAdbImport/actions/) [![Build Status](https://travis-ci.com/FelixErnst/tRNAdbImport.svg?branch=master)](https://travis-ci.com/FelixErnst/tRNAdbImport) [![BioC Build](https://bioconductor.org/shields/build/release/bioc/tRNAdbImport.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/tRNAdbImport/) [![codecov](https://codecov.io/gh/FelixErnst/tRNAdbImport/branch/master/graph/badge.svg)](https://codecov.io/gh/FelixErnst/tRNAdbImport) [![BioC Years](https://bioconductor.org/shields/years-in-bioc/tRNAdbImport.svg)](https://doi.org/doi:10.18129/B9.bioc.tRNAdbImport) <!-- badges: end --> The tRNAdb and mttRNAdb ([Juehling et al. 2009](#Literature)) is a compilation of tRNA sequences and tRNA genes. It is a follow up version of the database of [Sprinzl et al. (2005)](#Literature). Using `tRNAdbImport` the tRNAdb can be accessed as outlined on the website [trna.bioinf.uni-leipzig.de](trna.bioinf.uni-leipzig.de) directly via R. The results are returned as a `GRanges` object and can be further used in a BioC context. # Installation The current version of the `tRNAdbImport` package is available from Bioconductor. ```{r} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tRNAdbImport") # Load and attach the package library("tRNAdbImport") ``` ## Literature - Jühling, Frank; Mörl, Mario; Hartmann, Roland K.; Sprinzl, Mathias; Stadler, Peter F.; Pütz, Joern (2009): "TRNAdb 2009: Compilation of tRNA Sequences and tRNA Genes." Nucleic Acids Research 37 (suppl_1): D159–D162. doi:[10.1093/nar/gkn772](https://doi.org/10.1093/nar/gkn772). - Sprinzl, Mathias; Vassilenko, Konstantin S. (2005): "Compilation of tRNA Sequences and Sequences of tRNA Genes." Nucleic Acids Research 33 (suppl_1): D139–D140. doi:[10.1093/nar/gki012](https://doi.org/10.1093/nar/gki012).