1. switchde
  2. Graph
Graph of switchde
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  • 632afb1 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:52:04 -0400;
  • 61db86f (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:52:04 -0400;
  • c33214c bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:48:50 -0400;
  • 80e0d19 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:48:50 -0400;
  • a5a68ab bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:14 -0400;
  • e00371e (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:14:14 -0400;
  • 8cb305c bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:34:35 +0000;
  • 3d1c659 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:34:35 +0000;
  • 5691844 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:29:29 +0000;
  • 5e5b678 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:29:29 +0000;
  • 77e1200 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:20 +0000;
  • a66a9eb (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:22:20 +0000;
  • 419469d bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:16:51 -0400;
  • f2c6b64 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:16:51 -0400;
  • f91c64d bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:00:31 +0000;
  • 0657b98 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:00:31 +0000;
  • 1c6200c bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:03 -0400;
  • dca856a (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:00 -0400;
  • d65c173 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:13:48 -0400;
  • 192fd8b (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:03 -0400;
  • d1b6157 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:52:12 -0500;
  • f691267 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:52:10 -0500;
  • 7ea5e40 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:36 -0400;
  • b93112a bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:02 -0400;
  • 34b0eff replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:57:23 -0400;
  • 355b613 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:42 -0400;
  • deb0b07 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:43 -0400;
  • d306da7 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:21 -0400;
  • 80a58f3 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:21 -0400;
  • 0d88de0 Explicitly import sce by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 23:52:01 +0100;
  • 5a9973b Update readme by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 23:20:03 +0100;
  • 580d1db Remove any reference to scater by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 23:03:34 +0100;
  • cf36ad1 Run travis by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 22:46:36 +0100;
  • 6e52c91 Added travis and various tweaks by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 22:45:23 +0100;
  • a0b174a minor errors by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 22:13:38 +0100;
  • da0682f Now supports singlecellexperiment by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 21:39:31 +0100;
  • d16894d Fixed conflicts with bioc by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 21:14:19 +0100;
  • f7e2164 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 1f17a5e (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 69dc403 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 7e84576 now handle NAs in pseudotime by Kieran Campbell <kieranrcampbell@gmail.com> 2017-01-20 11:58:11 +0000;
  • 9e2dfab intelligent initialisation of lower bounds by Kieran Campbell <kieranrcampbell@gmail.com> 2017-01-20 11:12:07 +0000;
  • 8737206 Fixed bug of non-convergence of EM algorithm and updated vignette by Kieran Campbell <kieranrcampbell@gmail.com> 2016-11-01 12:46:41 +0000;
  • ba916a6 Updated vignette by Kieran Campbell <kieranrcampbell@gmail.com> 2016-11-01 11:52:07 +0000;
  • 81a867f Fixed zero inflated issues by Kieran Campbell <kieranrcampbell@gmail.com> 2016-10-31 17:24:35 +0000;
  • 13895c2 take out messaging by Kieran Campbell <kieranrcampbell@gmail.com> 2016-10-28 17:41:49 +0100;
  • 6f6652b Accept zeros in zero_inflated mode and handle exception by Kieran Campbell <kieranrcampbell@gmail.com> 2016-10-28 17:38:29 +0100;
  • 1311084 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • e815a5c (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • cf51ca1 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 68a4a9e Warn user about zero variance genes by Kieran Campbell <kieranrcampbell@gmail.com> 2016-10-07 16:54:40 +0100;
  • 4a3f907 Add warning to use to filter out zero variance genes by Kieran Campbell <kieranrcampbell@gmail.com> 2016-10-07 15:53:14 +0000;
  • 798525e Adding switchde, GRmetrics, CancerSubtypes, SVAPLSseq by Martin Morgan <mtmorgan@fhcrc.org> 2016-08-10 22:19:07 +0000;
  • 335a920 Added keyword internal to santise_inputs and sigmoid by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-26 15:16:12 +0100;
  • 40e5d82 Sorted scater import, bumped version number by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-25 22:20:46 +0100;
  • 36a38e7 Addressed bioconductor recommendations by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-25 22:15:47 +0100;
  • ade3596 Minor bug fix by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-21 17:12:45 +0100;
  • b7d0247 Complete rewrite of model fitting to be cleaner and more robust by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-21 15:27:06 +0100;
  • ee5494f Replacing zero-inflated code with new EM algorithm by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-20 16:44:28 +0100;
  • e3d3565 Removed pval testing too - doesn't work on windows by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-19 13:59:57 +0100;
  • 151b6af Added man files for synthetic data; removed random element of tests by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-19 13:52:35 +0100;
  • 9255803 Forgot to add new data to repo by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-19 13:42:51 +0100;
  • bbb3e45 Updated bundled data to have more genes; removed monocle dependency; vignette example now uses synthetic data by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-19 13:35:18 +0100;
  • aeb2b9b added monocle and hsmmsinglecell to suggests by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 20:43:42 +0100;
  • 64f8d87 Increment version num by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 20:35:11 +0100;
  • be06e3f Updated for bioconductor by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 20:34:12 +0100;
  • 02853b4 Added further unit tests by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 17:28:36 +0100;
  • 5f9a3f3 Passes check with no errors or warnings and biocheck with inconsequential recommendation and considerations by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 16:27:16 +0100;
  • 340dde6 Removed fitModel and testDE: no longer backwards compatible by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 16:14:54 +0100;
  • 3f11c13 Further bioc updates by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 16:09:34 +0100;
  • 2228d0f Updates for bioconductor submission by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-18 15:47:06 +0100;
  • 530fc99 Remove legacy code <a href="#1">#1</a> by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-16 17:49:21 +0100;
  • 0f58044 Added example data; added examples to main functions by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-16 17:45:19 +0100;
  • d45d0fc Minimal vignette now working by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-15 16:36:01 +0100;
  • a9ad793 Removed latex from readme by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-15 16:24:31 +0100;
  • 3cf8fbd forgot to add docs by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-15 16:23:20 +0100;
  • 4284ba9 Vignette and readme updated by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-15 16:23:01 +0100;
  • a21698b Updates incl readme by Kieran Campbell <kieranrcampbell@gmail.com> 2016-07-15 15:30:19 +0100;
  • d5395af Exported some functions by Kieran Campbell <kieranrcampbell@gmail.com> 2015-12-17 12:30:57 +0000;
  • 37c4657 Renamed package sctools -> switchde by Kieran Campbell <kieranrcampbell@gmail.com> 2015-11-29 23:01:17 +0000;
  • 52996e5 updated readme2 by Kieran Campbell <kieranrcampbell@gmail.com> 2015-10-22 13:42:31 +0100;
  • a697944 updated readme by Kieran Campbell <kieranrcampbell@gmail.com> 2015-10-22 13:38:16 +0100;
  • 081a0e5 Updated so fitModel works now by Kieran Campbell <kieranrcampbell@gmail.com> 2015-10-22 12:56:56 +0100;
  • 7e1a4bd Updated so testDE is common entrance for differential gene testing by Kieran Campbell <kieranrcampbell@gmail.com> 2015-10-22 12:27:57 +0100;
  • 9c21b82 update for EM naming convention by kieranrcampbell <kieranrcampbell@gmail.com> 2015-10-15 14:36:44 +0100;
  • 7eb2cbe updated docs by kieranrcampbell <kieranrcampbell@gmail.com> 2015-10-14 16:50:14 +0100;
  • 531acfe updated some docs & begin restructuring by kieranrcampbell <kieranrcampbell@gmail.com> 2015-10-14 16:40:36 +0100;
  • 469636c provisionally working by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-15 10:38:36 +0100;
  • d38e0e8 updated description by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-14 15:40:57 +0100;
  • 249516f added data generation by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-14 15:37:15 +0100;
  • 3192f7c updated for data generation by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-14 15:36:59 +0100;
  • 17fe518 working as package now by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-14 12:16:09 +0100;
  • 35c58ac initial commit by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-13 16:33:53 +0100;
  • b49641b Initial commit by Kieran Campbell <kieranrcampbell@gmail.com> 2015-07-13 16:29:18 +0100;