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Add files via upload

Pooja Gangras authored on 06/08/2021 14:27:43 • GitHub committed on 06/08/2021 14:27:43
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 \alias{tmhmm_fix_path}
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 \title{Retrieve Data from TMHMM and Fix Functionality of TMHMM R Package}
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 \usage{
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-tmhmm_fix_path(fasta_filename, folder_name = tmhmm::get_default_tmhmm_folder())
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+tmhmm_fix_path(fasta_filename, folder_name)
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 }
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 \arguments{
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 \item{fasta_filename}{Parameter containing input fasta file to be run on
Browse code

Add files via upload

Pooja Gangras authored on 30/07/2021 13:52:48 • GitHub committed on 30/07/2021 13:52:48
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/tmhmm_fix_path.R
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+\name{tmhmm_fix_path}
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+\alias{tmhmm_fix_path}
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+\title{Retrieve Data from TMHMM and Fix Functionality of TMHMM R Package}
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+\usage{
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+tmhmm_fix_path(fasta_filename, folder_name = tmhmm::get_default_tmhmm_folder())
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+}
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+\arguments{
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+\item{fasta_filename}{Parameter containing input fasta file to be run on
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+tmhmm}
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+
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+\item{folder_name}{Path to folder containing installed tmhmm software}
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+}
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+\value{
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+Raw results from tmhmm containing membrane locations for
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+each transcript
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+}
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+\description{
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+This function retrieves the raw data from tmhmm containing information
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+about the membrane location of each amino acid in a transcript.
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+In order to set a standard path that allows tmhmm to run, the path
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+is set to match that of the fasta file contining the amino acids.
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+}
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+\note{
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+In order for this function to work, there needs to be a .fasta file
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+containing the amino acid sequences for each transcript called "AA.fasta"
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+saved to a folder called output within the working directory.
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+}