man/tmhmm_fix_path.Rd
 48ae4b0c  % Generated by roxygen2: do not edit by hand % Please edit documentation in R/tmhmm_fix_path.R \name{tmhmm_fix_path} \alias{tmhmm_fix_path} \title{Retrieve Data from TMHMM and Fix Functionality of TMHMM R Package} \usage{  5554deae  tmhmm_fix_path(fasta_filename, folder_name)  48ae4b0c  } \arguments{ \item{fasta_filename}{Parameter containing input fasta file to be run on tmhmm} \item{folder_name}{Path to folder containing installed tmhmm software} } \value{ Raw results from tmhmm containing membrane locations for each transcript } \description{ This function retrieves the raw data from tmhmm containing information about the membrane location of each amino acid in a transcript. In order to set a standard path that allows tmhmm to run, the path is set to match that of the fasta file contining the amino acids. } \note{ In order for this function to work, there needs to be a .fasta file containing the amino acid sequences for each transcript called "AA.fasta" saved to a folder called output within the working directory. }