# staRgate A density-based automated gating pipeline for flow cytometry data to characterize the lineage, differentiation, and functional states of T-cells This is the GitHub repo for the _staRgate_ R package. # Authors Jasme Lee, Matthew Adamow, Colleen Maher, Xiyu Peng, Phillip Wong, Fiona Ehrich, Michael A. Postow, Margaret K. Callahan, Ronglai Shen, Katherine S. Panageas # Installation **Bioconductor version** + [Please refer to Bioconductor for full details on installation guidelines](https://www.bioconductor.org/install/) ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("staRgate") ``` **GitHub version (developmental)** ``` devtools::install_github("leejasme/staRgate") ``` # Tutorial A full example on [how to run the pipeline is on the webpage](https://leejasme.github.io/staRgate/articles/vignette_run_pipeline.html) # Funding Sources This research was funded by the V foundation, MSK-MIND, NIH R01CA276286, and NIH P30CA008748. # Contact Jasme Lee (leej22@mskcc.org)