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  • 2bf25c5 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:40:13 -0400;
  • 10a9664 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:40:13 -0400;
  • 4bec0e5 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:36:21 -0400;
  • de9d09b (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:36:21 -0400;
  • 2415bca (origin/RELEASE_3_16, RELEASE_3_16) Refactor vignette by Christian Panse <cp@fgcz.ethz.ch> 2022-12-12 16:07:35 +0100;
  • 9224ad0 cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2022-12-08 15:13:07 +0100;
  • 32d2e0d Fix typos and version bump 0.33.3 by Christian Panse <cp@fgcz.ethz.ch> 2022-12-07 22:47:46 +0100;
  • 9acd96d version bumo by Christian Panse <cp@fgcz.ethz.ch> 2022-12-07 20:37:55 +0100;
  • b08524b refactored specl.Rmd by Christian Panse <cp@fgcz.ethz.ch> 2022-12-07 20:27:42 +0100;
  • bd0176a Refactor vignette by Christian Panse <cp@fgcz.ethz.ch> 2022-12-07 08:58:07 +0100;
  • 83b4c3b Add files to last commit by Christian Panse <cp@fgcz.ethz.ch> 2022-12-07 08:07:48 +0100;
  • f452219 Refactor report by Christian Panse <cp@fgcz.ethz.ch> 2022-12-07 07:57:46 +0100;
  • 0185cd9 Update README.md by Christian Panse <cpanse@users.noreply.github.com> 2022-12-06 18:10:44 +0100;
  • fb7f811 Update README.md by Christian Panse <cpanse@users.noreply.github.com> 2022-12-06 18:10:16 +0100;
  • e129a09 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:44 -0400;
  • f44497f bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:44 -0400;
  • e54e9ac bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:22:46 +0000;
  • 4f0c06d (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:22:46 +0000;
  • af4c237 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:17:33 +0000;
  • 876f521 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:17:33 +0000;
  • 35264d0 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:09:34 +0000;
  • bb4fa57 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:09:34 +0000;
  • 8cec00d bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:00:50 -0400;
  • 07fefbb (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:00:50 -0400;
  • 9da81ff bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:45:15 +0000;
  • 53b337c (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:45:15 +0000;
  • aedded8 vignette cosmetics and version inc by Christian Panse <cp@fgcz.ethz.ch> 2019-12-10 09:54:50 +0100;
  • 9a8925a inc protViz version by Christian Panse <cp@fgcz.ethz.ch> 2019-11-26 09:08:46 +0100;
  • 46f66fa fix unit test failure for merge method and version inc by Christian Panse <cp@fgcz.ethz.ch> 2019-11-26 08:46:16 +0100;
  • 1715790 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:38:37 -0400;
  • 4c45ebb (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:07 -0400;
  • 8b53291 report cosmetics and added try block in specLSet plot method by Christian Panse <cp@fgcz.ethz.ch> 2019-10-25 07:48:34 +0200;
  • 622e006 DESC cosmetics; added chunk names in report; version inc by Christian Panse <cp@fgcz.ethz.ch> 2019-10-24 10:00:25 +0200;
  • ba55573 (origin/RELEASE_3_9, RELEASE_3_9) cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2019-09-16 09:05:38 +0200;
  • f5d1ffa fixing issue ``` From: <BBS-noreply@bioconductor.org> To: <cp@fgcz.ethz.ch> Subject: specL problems reported in the Multiple platform build/check report for BioC 3.9 User-Agent: Thunderbird 2.0.0.6 (Macintosh/20070728) Sender: <BBS-noreply@bioconductor.org> Errors-To: devteam-bioc@fhcrc.org Message-ID: <0100016d26d75384-1e5bcbe1-3989-4e2b-9f7f-0c8eeb7764c0-000000@email.amazonses.com> Date: Thu, 12 Sep 2019 18:58:29 +0000 ``` by Christian Panse <cp@fgcz.ethz.ch> 2019-09-13 10:04:35 +0200;
  • 53a5cfc bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:56 -0400;
  • 473ca31 bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:50 -0400;
  • c2d4a0a fix to pass cdsw unit test by Christian Panse <cp@fgcz.ethz.ch> 2019-01-26 15:58:52 +0100;
  • 9b3d6c5 code cosmetics to eliminate ERRORS and WARNINGS in \code{R CMD BiocCheck} of version 3.9. by Christian Panse <cp@fgcz.ethz.ch> 2019-01-24 08:46:33 +0100;
  • f49026a (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:51:19 -0500;
  • 9ee5c81 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:51:16 -0500;
  • d8994d3 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
  • f9155e6 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:56 -0400;
  • 5d23c34 replaced stop by warning by Christian Panse <cp@fgcz.ethz.ch> 2018-06-25 10:57:08 +0200;
  • d671fe5 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 301f51b (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:35 -0400;
  • a7b6389 version inc by cpanse <cp@fgcz.ethz.ch> 2018-02-13 10:08:47 +0100;
  • 9e1122f fix build for 3.7 by cpanse <cp@fgcz.ethz.ch> 2018-02-12 20:40:02 +0100;
  • 232ef92 version inc by cpanse <cp@fgcz.ethz.ch> 2018-01-19 21:11:37 +0100;
  • cdf1da3 fix by cpanse <cp@fgcz.ethz.ch> 2018-01-19 21:11:00 +0100;
  • c40b132 bug fix in test script by cpanse <cp@fgcz.ethz.ch> 2017-11-21 15:14:01 +0100;
  • d0fe2e9 added ORCID by cpanse <cp@fgcz.ethz.ch> 2017-11-20 07:44:38 +0100;
  • 80259b2 fix by cpanse <cp@fgcz.ethz.ch> 2017-11-20 07:38:07 +0100;
  • 4e238d5 Eliminated C++-11 and Rcpp linking. Passing unit tests. by cpanse <cp@fgcz.ethz.ch> 2017-11-20 07:35:39 +0100;
  • 4b9b639 use lower_bound_ function from protViz by cpanse <cp@fgcz.ethz.ch> 2017-11-19 11:34:58 +0100;
  • df96482 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:53 -0400;
  • f1011c8 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:45 -0400;
  • 763ffce delete superfluously ssrc function; use ssrc method from protViz (>=0.2.31) by Christian Panse <cp@fgcz.ethz.ch> 2017-05-29 07:07:52 +0000;
  • 8fd849b clean src by Christian Panse <cp@fgcz.ethz.ch> 2017-05-03 07:21:43 +0000;
  • 6a52d9d make it C++11 by Christian Panse <cp@fgcz.ethz.ch> 2017-05-03 07:12:28 +0000;
  • 52b0f21 fix R CMD check notes by Christian Panse <cp@fgcz.ethz.ch> 2017-05-03 07:09:45 +0000;
  • afdd123 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • a60bc39 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • c78a442 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 8f9a5e9 1.9.15 by Christian Panse <cp@fgcz.ethz.ch> 2017-04-21 06:30:24 +0000;
  • 1545d13 1.9.13 by Christian Panse <cp@fgcz.ethz.ch> 2017-04-20 08:32:35 +0000;
  • e410c15 make specLibrary global by Christian Panse <cp@fgcz.ethz.ch> 2017-04-19 14:55:36 +0000;
  • 88b9b13 fixed summary and did cosmetics on report by Christian Panse <cp@fgcz.ethz.ch> 2017-04-19 14:20:27 +0000;
  • 002899b 1.9.6 cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2017-04-18 16:00:15 +0000;
  • 2e64b1c 1.9.6 cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2017-04-18 15:58:48 +0000;
  • f385e22 1.9.6 by Christian Panse <cp@fgcz.ethz.ch> 2017-04-18 15:56:55 +0000;
  • 516eb9f vignette cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2017-04-14 13:29:15 +0000;
  • 5d4c1fb added report by Christian Panse <cp@fgcz.ethz.ch> 2017-04-14 12:59:00 +0000;
  • 461640b inc version# by Christian Panse <cp@fgcz.ethz.ch> 2017-04-12 14:16:44 +0000;
  • ee9ce58 removed mfrow=c(2,1) in plot function by Christian Panse <cp@fgcz.ethz.ch> 2017-04-12 13:46:32 +0000;
  • 72d1780 replace DOckerfile by Christian Panse <cp@fgcz.ethz.ch> 2017-03-28 13:12:39 +0000;
  • 7bbd12c DESCRIPTION cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2017-03-27 08:07:15 +0000;
  • 93fffbb bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • f43b7da (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 896fd36 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • eb4a84f fix zzz by Christian Panse <cp@fgcz.ethz.ch> 2016-06-23 10:22:31 +0000;
  • 5a6f8b8 zzz by Christian Panse <cp@fgcz.ethz.ch> 2016-06-23 10:15:31 +0000;
  • a51d7a1 zzz by Christian Panse <cp@fgcz.ethz.ch> 2016-06-23 10:09:14 +0000;
  • 2d780c2 zzz by Christian Panse <cp@fgcz.ethz.ch> 2016-06-23 10:07:54 +0000;
  • f67a1ea add NORMALIZATION by Christian Panse <cp@fgcz.ethz.ch> 2016-05-24 08:29:01 +0000;
  • d1d85c3 code comments by Witold Eryk Wolski <wolski@molgen.mpg.de> 2016-05-23 09:28:16 +0000;
  • 17fc272 specLSet summary/plot cosmetics by Christian Panse <cp@fgcz.ethz.ch> 2016-05-19 09:38:21 +0000;
  • 51f99c9 addapted package versions by Christian Panse <cp@fgcz.ethz.ch> 2016-05-17 08:37:34 +0000;
  • f77ac96 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • e08d388 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • ed35a2d svn del inst/NEWS by Christian Panse <cp@fgcz.ethz.ch> 2016-05-13 10:49:18 +0000;
  • 1d7d5ce 1.7.1 add NEWS.Rd; cosmentics in docu by Christian Panse <cp@fgcz.ethz.ch> 2016-05-13 10:48:51 +0000;
  • 3c23212 NOP by Witold Eryk Wolski <wolski@molgen.mpg.de> 2016-05-13 08:27:27 +0000;
  • 33da95f added pages numbers by Christian Panse <cp@fgcz.ethz.ch> 2016-05-13 08:09:43 +0000;
  • 8a58a10 removed decoy slot and added score slot to specL object by Witold Eryk Wolski <wolski@molgen.mpg.de> 2016-05-12 13:49:37 +0000;
  • 23c8f6e Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • ec2c6dd Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 7c98e16 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 8797d3f Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • d0132d0 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;