@@ -5,7 +5,7 @@

 #' @rdname colSums2-dgCMatrix-method

 #' @export

 setMethod("rowSums2", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -22,7 +22,7 @@ setMethod("rowSums2", signature(x = "dgCMatrix"),

 #' @rdname colMeans2-dgCMatrix-method

 #' @export

 setMethod("rowMeans2", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -38,7 +38,7 @@ setMethod("rowMeans2", signature(x = "dgCMatrix"),

 #' @rdname colMedians-dgCMatrix-method

 #' @export

 setMethod("rowMedians", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -54,7 +54,7 @@ setMethod("rowMedians", signature(x = "dgCMatrix"),

 #' @rdname colVars-dgCMatrix-method

 #' @export

 setMethod("rowVars", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -70,7 +70,7 @@ setMethod("rowVars", signature(x = "dgCMatrix"),

 #' @rdname colSds-dgCMatrix-method

 #' @export

 setMethod("rowSds", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -87,8 +87,8 @@ setMethod("rowSds", signature(x = "dgCMatrix"),

 #' @rdname colMads-dgCMatrix-method

 #' @export

 setMethod("rowMads", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, constant = 1.4826, na.rm=FALSE, ...){

-  colMads(t(x), rows = cols, cols = rows, constant = constant, na.rm = na.rm, ...)

+          function(x, rows = NULL, cols = NULL, constant = 1.4826, na.rm=FALSE){

+  colMads(t(x), rows = cols, cols = rows, constant = constant, na.rm = na.rm)

 })

@@ -97,7 +97,7 @@ setMethod("rowMads", signature(x = "dgCMatrix"),

 #' @rdname colLogSumExps-dgCMatrix-method

 #' @export

 setMethod("rowLogSumExps", signature(lx = "dgCMatrix"),

-          function(lx, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(lx, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     lx <- lx[rows, , drop = FALSE]

   }

@@ -113,7 +113,7 @@ setMethod("rowLogSumExps", signature(lx = "dgCMatrix"),

 #' @rdname colProds-dgCMatrix-method

 #' @export

 setMethod("rowProds", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -130,7 +130,7 @@ setMethod("rowProds", signature(x = "dgCMatrix"),

 #' @rdname colMins-dgCMatrix-method

 #' @export

 setMethod("rowMins", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -146,7 +146,7 @@ setMethod("rowMins", signature(x = "dgCMatrix"),

 #' @rdname colMaxs-dgCMatrix-method

 #' @export

 setMethod("rowMaxs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -162,7 +162,7 @@ setMethod("rowMaxs", signature(x = "dgCMatrix"),

 #' @rdname colOrderStats-dgCMatrix-method

 #' @export

 setMethod("rowOrderStats", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, which = 1, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, which = 1, na.rm=FALSE){

   if(which < 1 || which > ncol(x)){

     stop("Argument 'which' is out of range.")

   }

@@ -182,7 +182,7 @@ setMethod("rowOrderStats", signature(x = "dgCMatrix"),

 #' @rdname colWeightedMeans-dgCMatrix-method

 #' @export

 setMethod("rowWeightedMeans", signature(x = "dgCMatrix"),

-    function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+    function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE){

   colWeightedMeans(t(x), w = w, rows = cols, cols = rows, na.rm = na.rm)

 })

@@ -192,7 +192,7 @@ setMethod("rowWeightedMeans", signature(x = "dgCMatrix"),

 #' @rdname colWeightedMedians-dgCMatrix-method

 #' @export

 setMethod("rowWeightedMedians", signature(x = "dgCMatrix"),

-    function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+    function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE){

   colWeightedMedians(t(x), w = w, rows = cols, cols = rows, na.rm = na.rm)

 })

@@ -202,8 +202,8 @@ setMethod("rowWeightedMedians", signature(x = "dgCMatrix"),

 #' @rdname colWeightedVars-dgCMatrix-method

 #' @export

 setMethod("rowWeightedVars", signature(x = "dgCMatrix"),

-function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE, ...){

-  colWeightedVars(t(x), w = w, rows = cols, cols = rows, na.rm = na.rm, ...)

+function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE){

+  colWeightedVars(t(x), w = w, rows = cols, cols = rows, na.rm = na.rm)

 })

@@ -213,7 +213,7 @@ function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE, ...){

 #' @rdname colWeightedSds-dgCMatrix-method

 #' @export

 setMethod("rowWeightedSds", signature(x = "dgCMatrix"),

-          function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -234,8 +234,8 @@ setMethod("rowWeightedSds", signature(x = "dgCMatrix"),

 #' @rdname colWeightedMads-dgCMatrix-method

 #' @export

 setMethod("rowWeightedMads", signature(x = "dgCMatrix"),

-          function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE,  constant = 1.4826, ...){

-  colWeightedMads(t(x), w=w, rows = cols, cols = rows, na.rm=na.rm, constant = constant, ...)

+          function(x, w = NULL, rows = NULL, cols = NULL, na.rm=FALSE,  constant = 1.4826){

+  colWeightedMads(t(x), w=w, rows = cols, cols = rows, na.rm=na.rm, constant = constant)

 })

@@ -245,7 +245,7 @@ setMethod("rowWeightedMads", signature(x = "dgCMatrix"),

 #' @rdname colCounts-dgCMatrix-method

 #' @export

 setMethod("rowCounts", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, value = TRUE, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, value = TRUE, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -261,7 +261,7 @@ setMethod("rowCounts", signature(x = "dgCMatrix"),

 #' @rdname colAnyNAs-dgCMatrix-method

 #' @export

 setMethod("rowAnyNAs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, ...){

+          function(x, rows = NULL, cols = NULL){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -277,7 +277,7 @@ setMethod("rowAnyNAs", signature(x = "dgCMatrix"),

 #' @rdname colAnys-dgCMatrix-method

 #' @export

 setMethod("rowAnys", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, value = TRUE, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, value = TRUE, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -294,7 +294,7 @@ setMethod("rowAnys", signature(x = "dgCMatrix"),

 #' @rdname colAlls-dgCMatrix-method

 #' @export

 setMethod("rowAlls", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, value = TRUE, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, value = TRUE, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -311,7 +311,7 @@ setMethod("rowAlls", signature(x = "dgCMatrix"),

 #' @rdname colCollapse-dgCMatrix-method

 #' @export

 setMethod("rowCollapse", signature(x = "dgCMatrix"),

-          function(x, idxs, rows = NULL, ...){

+          function(x, idxs, rows = NULL){

   idxs <- rep(idxs, length.out = nrow(x))

   if (!is.null(rows)) {

     x <- x[rows, , drop = FALSE]

@@ -358,7 +358,7 @@ setMethod("rowQuantiles", signature(x = "dgCMatrix"),

 #' @rdname colTabulates-dgCMatrix-method

 #' @export

 setMethod("rowTabulates", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, values = NULL, ...){

+          function(x, rows = NULL, cols = NULL, values = NULL){

   colTabulates(t(x), rows = cols, cols = rows, values = values)

 })

@@ -369,7 +369,7 @@ setMethod("rowTabulates", signature(x = "dgCMatrix"),

 #' @rdname colIQRs-dgCMatrix-method

 #' @export

 setMethod("rowIQRs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -387,7 +387,7 @@ setMethod("rowIQRs", signature(x = "dgCMatrix"),

 #' @rdname colRanges-dgCMatrix-method

 #' @export

 setMethod("rowRanges", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm=FALSE, ...){

+          function(x, rows = NULL, cols = NULL, na.rm=FALSE){

   tx <- t(x)

   row_max <- colMaxs(tx, rows = cols, cols = rows, na.rm = na.rm)

   row_min <- colMins(tx, rows = cols, cols = rows, na.rm = na.rm)

@@ -401,7 +401,7 @@ setMethod("rowRanges", signature(x = "dgCMatrix"),

 #' @rdname colCumsums-dgCMatrix-method

 #' @export

 setMethod("rowCumsums", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, ...){

+          function(x, rows = NULL, cols = NULL){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -418,7 +418,7 @@ setMethod("rowCumsums", signature(x = "dgCMatrix"),

 #' @rdname colCumprods-dgCMatrix-method

 #' @export

 setMethod("rowCumprods", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, ...){

+          function(x, rows = NULL, cols = NULL){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -435,7 +435,7 @@ setMethod("rowCumprods", signature(x = "dgCMatrix"),

 #' @rdname colCummins-dgCMatrix-method

 #' @export

 setMethod("rowCummins", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, ...){

+          function(x, rows = NULL, cols = NULL){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -452,7 +452,7 @@ setMethod("rowCummins", signature(x = "dgCMatrix"),

 #' @rdname colCummaxs-dgCMatrix-method

 #' @export

 setMethod("rowCummaxs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, ...){

+          function(x, rows = NULL, cols = NULL){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

@@ -469,14 +469,14 @@ setMethod("rowCummaxs", signature(x = "dgCMatrix"),

 #' @rdname colRanks-dgCMatrix-method

 #' @export

 setMethod("rowRanks", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL,  ties.method = c("max", "average", "min"), preserve.shape = TRUE, na.handling = c("keep", "last"), ...){

+          function(x, rows = NULL, cols = NULL,  ties.method = c("max", "average", "min"), preserve.shape = TRUE, na.handling = c("keep", "last")){

   if(! is.null(rows)){

     x <- x[rows, , drop = FALSE]

   }

   if(! is.null(cols)){

     x <- x[, cols, drop = FALSE]

   }

-  colRanks(t(x), ties.method = ties.method, preserve.shape = !preserve.shape, na.handling = na.handling, ...)

+  colRanks(t(x), ties.method = ties.method, preserve.shape = !preserve.shape, na.handling = na.handling)

 })

@@ -485,8 +485,8 @@ setMethod("rowRanks", signature(x = "dgCMatrix"),

 #' @export

 setMethod("rowDiffs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, lag = 1L, differences = 1L, ...){

-  t(colDiffs(t(x), rows = cols, cols = rows, lag = lag, differences = differences, ...))

+          function(x, rows = NULL, cols = NULL, lag = 1L, differences = 1L){

+  t(colDiffs(t(x), rows = cols, cols = rows, lag = lag, differences = differences))

 })

@@ -495,8 +495,8 @@ setMethod("rowDiffs", signature(x = "dgCMatrix"),

 #' @rdname colVarDiffs-dgCMatrix-method

 #' @export

 setMethod("rowVarDiffs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0, ...){

-  colVarDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim, ...)

+          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0){

+  colVarDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim)

 })

@@ -506,8 +506,8 @@ setMethod("rowVarDiffs", signature(x = "dgCMatrix"),

 #' @rdname colSdDiffs-dgCMatrix-method

 #' @export

 setMethod("rowSdDiffs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0, ...){

-  colSdDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim, ...)

+          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0){

+  colSdDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim)

 })

@@ -517,8 +517,8 @@ setMethod("rowSdDiffs", signature(x = "dgCMatrix"),

 #' @rdname colMadDiffs-dgCMatrix-method

 #' @export

 setMethod("rowMadDiffs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0, constant = 1.4826, ...){

-  colMadDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim, constant = constant, ...)

+          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0, constant = 1.4826){

+  colMadDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim, constant = constant)

 })

@@ -528,8 +528,8 @@ setMethod("rowMadDiffs", signature(x = "dgCMatrix"),

 #' @rdname colIQRDiffs-dgCMatrix-method

 #' @export

 setMethod("rowIQRDiffs", signature(x = "dgCMatrix"),

-          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0, ...){

-  colIQRDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim, ...)

+          function(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0){

+  colIQRDiffs(t(x), rows = cols, cols = rows, na.rm=na.rm, diff=diff, trim = trim)

 })

@@ -6,9 +6,9 @@

 \title{Check if all elements in a row (column) of a matrix-like object are equal to

 a value}

 \usage{

-\S4method{colAlls}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE, ...)

+\S4method{colAlls}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE)

-\S4method{rowAlls}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE, ...)

+\S4method{rowAlls}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -25,8 +25,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{logical}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowAnyNAs,dgCMatrix-method}

 \title{Check if any elements in a row (column) of a matrix-like object is missing}

 \usage{

-\S4method{colAnyNAs}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{colAnyNAs}{dgCMatrix}(x, rows = NULL, cols = NULL)

-\S4method{rowAnyNAs}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{rowAnyNAs}{dgCMatrix}(x, rows = NULL, cols = NULL)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -19,8 +19,6 @@ subsetting is done.}

 \item{cols}{A \code{\link[base]{vector}} indicating the subset of rows

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{logical}} \code{\link[base]{vector}} of

@@ -6,9 +6,9 @@

 \title{Check if any elements in a row (column) of a matrix-like object is equal to

 a value}

 \usage{

-\S4method{colAnys}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE, ...)

+\S4method{colAnys}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE)

-\S4method{rowAnys}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE, ...)

+\S4method{rowAnys}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -25,8 +25,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{logical}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowCollapse,dgCMatrix-method}

 \title{Extract one cell from each row (column) of a matrix-like object}

 \usage{

-\S4method{colCollapse}{dgCMatrix}(x, idxs = idxs, cols = NULL, ...)

+\S4method{colCollapse}{dgCMatrix}(x, idxs, cols = NULL)

-\S4method{rowCollapse}{dgCMatrix}(x, idxs, rows = NULL, ...)

+\S4method{rowCollapse}{dgCMatrix}(x, idxs, rows = NULL)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -19,8 +19,6 @@ It is recycled to match the number of rows (column)}

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-\item{...}{Additional arguments passed to specific methods.}

-

 \item{rows}{A \code{\link[base]{vector}} indicating the subset of rows

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

@@ -6,9 +6,9 @@

 \title{Count how often an element in a row (column) of a matrix-like object is

 equal to a value}

 \usage{

-\S4method{colCounts}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE, ...)

+\S4method{colCounts}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE)

-\S4method{rowCounts}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE, ...)

+\S4method{rowCounts}{dgCMatrix}(x, rows = NULL, cols = NULL, value = TRUE, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -25,8 +25,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{integer}} \code{\link[base]{vector}} of

@@ -6,9 +6,9 @@

 \title{Calculates the cumulative maxima for each row (column) of a matrix-like

 object}

 \usage{

-\S4method{colCummaxs}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{colCummaxs}{dgCMatrix}(x, rows = NULL, cols = NULL)

-\S4method{rowCummaxs}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{rowCummaxs}{dgCMatrix}(x, rows = NULL, cols = NULL)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -20,8 +20,6 @@ subsetting is done.}

 \item{cols}{A \code{\link[base]{vector}} indicating the subset of rows

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{matrix}}

@@ -6,9 +6,9 @@

 \title{Calculates the cumulative minima for each row (column) of a matrix-like

 object}

 \usage{

-\S4method{colCummins}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{colCummins}{dgCMatrix}(x, rows = NULL, cols = NULL)

-\S4method{rowCummins}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{rowCummins}{dgCMatrix}(x, rows = NULL, cols = NULL)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -20,8 +20,6 @@ subsetting is done.}

 \item{cols}{A \code{\link[base]{vector}} indicating the subset of rows

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{matrix}}

@@ -6,9 +6,9 @@

 \title{Calculates the cumulative product for each row (column) of a matrix-like

 object}

 \usage{

-\S4method{colCumprods}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{colCumprods}{dgCMatrix}(x, rows = NULL, cols = NULL)

-\S4method{rowCumprods}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{rowCumprods}{dgCMatrix}(x, rows = NULL, cols = NULL)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -20,8 +20,6 @@ subsetting is done.}

 \item{cols}{A \code{\link[base]{vector}} indicating the subset of rows

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{matrix}}

@@ -5,9 +5,9 @@

 \alias{rowCumsums,dgCMatrix-method}

 \title{Calculates the cumulative sum for each row (column) of a matrix-like object}

 \usage{

-\S4method{colCumsums}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{colCumsums}{dgCMatrix}(x, rows = NULL, cols = NULL)

-\S4method{rowCumsums}{dgCMatrix}(x, rows = NULL, cols = NULL, ...)

+\S4method{rowCumsums}{dgCMatrix}(x, rows = NULL, cols = NULL)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -19,8 +19,6 @@ subsetting is done.}

 \item{cols}{A \code{\link[base]{vector}} indicating the subset of rows

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{matrix}}

@@ -6,9 +6,9 @@

 \title{Calculates the difference between each element of a row (column) of a

 matrix-like object}

 \usage{

-\S4method{colDiffs}{dgCMatrix}(x, rows = NULL, cols = NULL, lag = 1L, differences = 1L, ...)

+\S4method{colDiffs}{dgCMatrix}(x, rows = NULL, cols = NULL, lag = 1L, differences = 1L)

-\S4method{rowDiffs}{dgCMatrix}(x, rows = NULL, cols = NULL, lag = 1L, differences = 1L, ...)

+\S4method{rowDiffs}{dgCMatrix}(x, rows = NULL, cols = NULL, lag = 1L, differences = 1L)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -24,8 +24,6 @@ subsetting is done.}

 \item{lag}{An integer specifying the lag.}

 \item{differences}{An integer specifying the order of difference.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{matrix}}

@@ -6,25 +6,9 @@

 \title{Calculates the interquartile range of the difference between each element of

 a row (column) of a matrix-like object}

 \usage{

-\S4method{colIQRDiffs}{dgCMatrix}(

-  x,

-  rows = NULL,

-  cols = NULL,

-  na.rm = FALSE,

-  diff = 1L,

-  trim = 0,

-  ...

-)

+\S4method{colIQRDiffs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0)

-\S4method{rowIQRDiffs}{dgCMatrix}(

-  x,

-  rows = NULL,

-  cols = NULL,

-  na.rm = FALSE,

-  diff = 1L,

-  trim = 0,

-  ...

-)

+\S4method{rowIQRDiffs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, diff = 1L, trim = 0)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -44,8 +28,6 @@ are excluded first, otherwise not.}

 \item{trim}{A double in [0,1/2] specifying the fraction of observations to

 be trimmed from each end of (sorted) x before estimation.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -6,9 +6,9 @@

 \title{Calculates the interquartile range for each row (column) of a matrix-like

 object}

 \usage{

-\S4method{colIQRs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colIQRs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowIQRs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowIQRs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -23,8 +23,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -6,9 +6,9 @@

 \title{Accurately calculates the logarithm of the sum of exponentials for each row

 (column) of a matrix-like object}

 \usage{

-\S4method{colLogSumExps}{dgCMatrix}(lx, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colLogSumExps}{dgCMatrix}(lx, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowLogSumExps}{dgCMatrix}(lx, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowLogSumExps}{dgCMatrix}(lx, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{lx}{An NxK matrix-like object. Typically \code{lx} are \code{log(x)} values.}

@@ -23,8 +23,6 @@ done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -13,8 +13,7 @@ element of a row (column) of a matrix-like object}

   na.rm = FALSE,

   diff = 1L,

   trim = 0,

-  constant = 1.4826,

-  ...

+  constant = 1.4826

 )

 \S4method{rowMadDiffs}{dgCMatrix}(

@@ -24,8 +23,7 @@ element of a row (column) of a matrix-like object}

   na.rm = FALSE,

   diff = 1L,

   trim = 0,

-  constant = 1.4826,

-  ...

+  constant = 1.4826

 )

 }

 \arguments{

@@ -48,8 +46,6 @@ are excluded first, otherwise not.}

 be trimmed from each end of (sorted) x before estimation.}

 \item{constant}{A scale factor. See \code{\link{mad}} for details.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -6,25 +6,9 @@

 \title{Calculates the median absolute deviation for each row (column) of a

 matrix-like object}

 \usage{

-\S4method{colMads}{dgCMatrix}(

-  x,

-  rows = NULL,

-  cols = NULL,

-  center = NULL,

-  constant = 1.4826,

-  na.rm = FALSE,

-  ...

-)

+\S4method{colMads}{dgCMatrix}(x, rows = NULL, cols = NULL, constant = 1.4826, na.rm = FALSE)

-\S4method{rowMads}{dgCMatrix}(

-  x,

-  rows = NULL,

-  cols = NULL,

-  center = NULL,

-  constant = 1.4826,

-  na.rm = FALSE,

-  ...

-)

+\S4method{rowMads}{dgCMatrix}(x, rows = NULL, cols = NULL, constant = 1.4826, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -37,15 +21,11 @@ subsetting is done.}

 (and/or columns) to operate over. If \code{\link[base]{NULL}}, no

 subsetting is done.}

-\item{center}{(optional) the center, defaults to the row means}

-

 \item{constant}{A scale factor. See \code{stats::\link[stats]{mad}()} for

 details.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowMaxs,dgCMatrix-method}

 \title{Calculates the maximum for each row (column) of a matrix-like object}

 \usage{

-\S4method{colMaxs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colMaxs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowMaxs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowMaxs}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -22,8 +22,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowMeans2,dgCMatrix-method}

 \title{Calculates the mean for each row (column) of a matrix-like object}

 \usage{

-\S4method{colMeans2}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colMeans2}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowMeans2}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowMeans2}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -22,8 +22,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowMedians,dgCMatrix-method}

 \title{Calculates the median for each row (column) of a matrix-like object}

 \usage{

-\S4method{colMedians}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colMedians}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowMedians}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowMedians}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -22,8 +22,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowMins,dgCMatrix-method}

 \title{Calculates the minimum for each row (column) of a matrix-like object}

 \usage{

-\S4method{colMins}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colMins}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowMins}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowMins}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -22,8 +22,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowOrderStats,dgCMatrix-method}

 \title{Calculates an order statistic for each row (column) of a matrix-like object}

 \usage{

-\S4method{colOrderStats}{dgCMatrix}(x, rows = NULL, cols = NULL, which = 1, na.rm = FALSE, ...)

+\S4method{colOrderStats}{dgCMatrix}(x, rows = NULL, cols = NULL, which = 1, na.rm = FALSE)

-\S4method{rowOrderStats}{dgCMatrix}(x, rows = NULL, cols = NULL, which = 1, na.rm = FALSE, ...)

+\S4method{rowOrderStats}{dgCMatrix}(x, rows = NULL, cols = NULL, which = 1, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -24,8 +24,6 @@ subsetting is done.}

 statistic to be returned}

 \item{na.rm}{If TRUE, NAs are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -5,9 +5,9 @@

 \alias{rowProds,dgCMatrix-method}

 \title{Calculates the product for each row (column) in a matrix}

 \usage{

-\S4method{colProds}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colProds}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowProds}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowProds}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -22,8 +22,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 Returns a \code{\link[base]{numeric}} \code{\link[base]{vector}} of

@@ -6,9 +6,9 @@

 \title{Calculates the minimum and maximum for each row (column) of a matrix-like

 object}

 \usage{

-\S4method{colRanges}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{colRanges}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

-\S4method{rowRanges}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE, ...)

+\S4method{rowRanges}{dgCMatrix}(x, rows = NULL, cols = NULL, na.rm = FALSE)

 }

 \arguments{

 \item{x}{An NxK matrix-like object.}

@@ -23,8 +23,6 @@ subsetting is done.}

 \item{na.rm}{If \code{\link[base:logical]{TRUE}}, \code{\link[base]{NA}}s

 are excluded first, otherwise not.}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 a \code{\link[base]{numeric}} \code{Nx2} (\code{Kx2})

@@ -12,8 +12,7 @@ object}

   cols = NULL,

   ties.method = c("max", "average", "min"),

   preserve.shape = FALSE,

-  na.handling = c("keep", "last"),

-  ...

+  na.handling = c("keep", "last")

 )

 \S4method{rowRanks}{dgCMatrix}(

@@ -22,8 +21,7 @@ object}

   cols = NULL,

   ties.method = c("max", "average", "min"),

   preserve.shape = TRUE,

-  na.handling = c("keep", "last"),

-  ...

+  na.handling = c("keep", "last")

 )

 }

 \arguments{

@@ -47,8 +45,6 @@ dimensions as the input matrix. By default this is true for `rowRanks()`, but fa

 \item{na.handling}{string specifying how `NA`s are handled. They can either be preserved with an `NA` rank

 ('keep') or sorted in at the end ('last'). Default is 'keep' derived from the behavior of the equivalent}

-

-\item{...}{Additional arguments passed to specific methods.}

 }

 \value{

 a matrix of type \code{\link[base]{integer}} is returned unless

@@ -6,25 +6,9 @@

 \title{Calculates the standard deviation of the difference between each element of

 a row (column) of a matrix-like object}

 \usage{

-\S4method{colSdDiffs}{dgCMatrix}(