<!-- README.md is generated from README.Rmd. Please edit that file --> # Spatial Omic Structure Analysis <!-- badges: start --> <!-- badges: end --> `sosta` (spatial omics structure analysis) is a framework to reconstruct, characterize and compare spatial structures from spatial omics data. `sosta` builds on existing R packages for spatial analysis such as `spatstat`, `sf` and the [Bioconductor](https://bioconductor.org/) environment by integrating with packages `SpatialExperiment` and `SpatialFeatureExperiment`, which facilitates the implementation of additional custom metrics that fit the needs of users. ## Installation You can install the development version of `sosta` from [GitHub](https://github.com/) with: ``` r # install.packages("devtools") devtools::install_github("sgunz/sosta") ``` ## Disclaimer This package is still under active development. ## Feedback We are happy to get your feedback. Please send it via email to [Samuel Gunz](https://www.mls.uzh.ch/en/research/robinson/groupmembers/samuel-gunz.html) or open a issue on [GitHub](https://github.com/sgunz/sosta/issues).