1. slalom
  2. Graph
Graph of slalom
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  • 74f077c (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:00:26 -0400;
  • 6ff8b4c (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:00:26 -0400;
  • 4056347 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:57:13 -0400;
  • 1e36ad4 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:57:13 -0400;
  • b3e3e95 (origin/RELEASE_3_16, RELEASE_3_16) Bump version to trigger rebuild and propagation of new Mac binary by J Wokaty <jwokaty@users.noreply.github.com> 2023-01-19 11:18:40 -0500;
  • d1ae591 Bump version to trigger rebuild and propagation of new arm64 binary by J Wokaty <jwokaty@users.noreply.github.com> 2022-12-13 18:11:13 -0500;
  • 79dc471 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:32 -0400;
  • 4c0ee39 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:32 -0400;
  • d30edff bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:44:11 +0000;
  • c0e3048 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:44:11 +0000;
  • 2a915ba Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:55:27 -0500;
  • 3dae5e7 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:38:55 +0000;
  • 140fa92 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:38:55 +0000;
  • da9ea84 Fixing building error caused by changes in knitr by Davis McCarthy <dmccarthy@svi.edu.au> 2021-09-15 17:35:48 +1000;
  • 0dfcd51 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:31:02 +0000;
  • 926621e (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:31:02 +0000;
  • 12517a7 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:28:41 -0400;
  • af10976 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:28:41 -0400;
  • 43b8f37 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:11:16 +0000;
  • 33d959d (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:11:16 +0000;
  • 8c46197 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:30 -0400;
  • c7a016f (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:50 -0400;
  • c9e0998 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:17 -0400;
  • 70a9755 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:09 -0400;
  • 80469d2 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:50:59 -0500;
  • b2e35aa Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:50:53 -0500;
  • b640fa1 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:38 -0400;
  • 6def2e3 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:06 -0400;
  • 568bd90 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:56:35 -0400;
  • a5ad904 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
  • 1411286 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:48 -0400;
  • 7c3fefe Fixing a bug with colour of points in plotLoadings() by davismcc <davismcc@gmail.com> 2018-04-25 18:24:22 -0700;
  • 8467738 Adding test for initialisation with more than 500 cells. Fixed initialisation warning in C++ by davismcc <davismcc@gmail.com> 2018-04-25 10:36:18 -0700;
  • 6344416 Merging DESCRIPTION changes by davismcc <davismcc@gmail.com> 2018-04-24 08:25:33 -0700;
  • 1b6d63f Merge branch 'master' of https://github.com/PMBio/slalom by davismcc <davismcc@gmail.com> 2018-04-19 15:25:46 +0100;
  • 07feb5f Adding docs to plotLoadings by davismcc <davismcc@gmail.com> 2018-04-19 15:25:44 +0100;
  • 1a57bcc Merge pull request <a href="#11">#11</a> from leonfodoulian/patch-1 by Davis McCarthy <davismcc@gmail.com> 2018-04-04 17:31:37 +0100;
  • 287291a Bumping version number by davismcc <davismcc@gmail.com> 2018-04-04 15:35:16 +0100;
  • 21f69dd decreasing number of cells before using rpca back to 500; setting k=2 for rpca by davismcc <davismcc@gmail.com> 2018-03-29 18:24:13 +0100;
  • 064b27a increasing max number of cells before rpca is used in pre-training of model by davismcc <davismcc@gmail.com> 2018-03-29 18:15:46 +0100;
  • dd75413 increasing max number of cells before rpca is used in initialisation by davismcc <davismcc@gmail.com> 2018-03-29 17:52:18 +0100;
  • 4ce74cc Update plotLoadings annotation labels by Leon Fodoulian <30617172+leonfodoulian@users.noreply.github.com> 2018-03-10 14:12:32 +0100;
  • 99f2337 Bumping version number by davismcc <davismcc@gmail.com> 2017-11-21 19:36:41 +0000;
  • a10a7d8 Merge branch 'master' of https://github.com/PMBio/slalom by davismcc <davismcc@gmail.com> 2017-11-21 19:36:04 +0000;
  • 36f562a Fixing bug with zero-variance genes reported by Bernard Thienpont. by davismcc <davismcc@gmail.com> 2017-11-21 19:35:50 +0000;
  • 0338c80 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:33 -0400;
  • 8c29e0b (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:42:02 -0400;
  • dae0d3f update readme by Flo <fbuettner.phys@gmail.com> 2017-10-24 21:48:24 +0200;
  • 0d414e4 Adding sessionInfo() to vignette and fixing NOTE about global variables by davismcc <davismcc@gmail.com> 2017-10-17 22:37:13 +0100;
  • 4f0113a Added scater to Suggests by davismcc <davismcc@gmail.com> 2017-10-17 19:42:58 +0100;
  • 1d469ae Completed vignette. by davismcc <davismcc@gmail.com> 2017-10-17 19:42:09 +0100;
  • e0f8cb5 Adding function to add Slalom results to SingleCellExperiment object; more tests; bug fixes by davismcc <davismcc@gmail.com> 2017-10-17 17:48:22 +0100;
  • 6f67d21 Fixing warnings from BiocCheck by davismcc <davismcc@gmail.com> 2017-10-17 10:47:14 +0100;
  • dfd6bcd Adding plotting functions. by davismcc <davismcc@gmail.com> 2017-10-17 01:01:24 +0100;
  • da6b8d5 Minor bug fixes and adding to tests by davismcc <davismcc@gmail.com> 2017-10-16 15:59:06 +0100;
  • 6992581 Adding .preTrain() method and updating tests by davismcc <davismcc@gmail.com> 2017-10-14 14:04:18 +0100;
  • 20a2080 Bumping version number by davismcc <davismcc@gmail.com> 2017-10-12 15:13:35 +0100;
  • f345c82 Responding to Bioc feedback by davismcc <davismcc@gmail.com> 2017-10-12 15:13:17 +0100;
  • e1a333a Adding REACTOME license by davismcc <davismcc@gmail.com> 2017-10-06 21:04:35 +0100;
  • 2f2a278 Ready for Bioconductor submission by davismcc <davismcc@gmail.com> 2017-10-06 21:03:41 +0100;
  • 3d976b3 Adding new man files by davismcc <davismcc@gmail.com> 2017-10-06 15:05:58 +0100;
  • 15a5f3a Package ready for Bioconductor submission (apart from bugs). by davismcc <davismcc@gmail.com> 2017-10-06 15:05:16 +0100;
  • 6a2eea3 Additions for package testing by davismcc <davismcc@gmail.com> 2017-10-05 15:53:32 +0100;
  • cfe9148 Updating implementation by davismcc <davismcc@gmail.com> 2017-10-05 15:05:17 +0100;
  • a685478 First iteration slalom pkg with integration between C++ and R. Model builds and trains but currently does not converge. by davismcc <davismcc@gmail.com> 2016-12-18 16:01:08 +0000;
  • 2932118 Adding initialize method (init) using randomized PCA for SlalomModel objects. Documentation increased. by davismcc <davismcc@gmail.com> 2016-12-12 17:05:32 +0000;
  • 9f5551a Update README.md by Davis McCarthy <davismcc@gmail.com> 2016-12-02 18:09:46 +0000;
  • 9a15075 Update README.md by Davis McCarthy <davismcc@gmail.com> 2016-12-02 18:07:00 +0000;
  • 932e09e Commit to trigger travis build by davismcc <davismcc@gmail.com> 2016-12-02 11:55:28 +0000;
  • 541b6f3 Adding travis and appveyor CI. Added "nHidden" slot to SlalomModel class. by davismcc <davismcc@gmail.com> 2016-12-02 11:39:36 +0000;
  • e0e30d9 Adding docs for mesc data and tests for newSlalomModel by davismcc <davismcc@gmail.com> 2016-12-02 11:21:59 +0000;
  • 119c89c Adding a SlalomModel R class and a method newSlalomModel. Rough C++ model update code added (untested). by davismcc <davismcc@gmail.com> 2016-12-01 22:29:19 +0000;
  • b120763 Initialising package with a skeleton that includes Rcpp code, roxygen2 documentation and unit testing with testthat. by davismcc <davismcc@gmail.com> 2016-11-25 14:18:13 +0000;
  • 95dc25c first commit by Flo <fbuettner.phys@gmail.com> 2016-11-25 14:08:19 +0000;