@@ -1,7 +1,7 @@

 Package: skewr

 Title: Visualize Intensities Produced by Illumina's Human Methylation

         450k BeadChip

-Version: 1.13.1

+Version: 1.13.2

 Authors@R: c(person("Ryan", "Putney", role = c("cre", "aut"), email =

         "ryanputney@gmail.com"), person("Steven", "Eschrich", role =

         "aut"), person("Anders", "Berglund", role = "aut"))

@@ -126,14 +126,15 @@ which is essentially the probability of finding a given point in the $j$\textsup

 <<install, eval=FALSE>>=

 packages.install('mixsmsn')

-source('http://bioconductor.org/biocLite.R')

-biocLite(c('skewr', 'methylumi', 'minfi', 'wateRmelon',

+if (!requireNamespace("BiocManager", quietly=TRUE))

+    install.packages("BiocManager")

+BiocManager::install(c('skewr', 'methylumi', 'minfi', 'wateRmelon',

            'IlluminaHumanMethylation450kmanifest', 'IRanges'))

 @

 And to run this vignette as written:

 <<minfiData, eval=FALSE>>=

-biocLite('minfiData')

+BiocManager::install('minfiData')

 @

 \subsection{Load \Rpackage{skewr}}