Graph ofsingleCellTK
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  • 99e76b9c3 (HEAD -> master, origin/master, origin/HEAD) Add master branch to GitHub Action workflows by Yichen Wang <wangych@bu.edu> 2022-06-30 14:32:34 -0400;
  • c22dbbf9c Fix CHECK warning by Yichen Wang <wangych@bu.edu> 2022-06-30 11:24:27 -0400;
  • 2f1fa6bff Fix CHECK warning by Yichen Wang <wangych@bu.edu> 2022-06-30 10:50:21 -0400;
  • 58223dcad Fix CHECK warning by Yichen Wang <wangych@bu.edu> 2022-06-29 20:29:14 -0400;
  • 7d46c6eb7 new version 2.7.1 by Yichen Wang <wangych@bu.edu> 2022-06-29 19:30:51 -0400;
  • f0b0d74b6 Fix check errors by Yichen Wang <wangych@bu.edu> 2022-06-28 18:07:14 -0400;
  • fc7a1024b Fix README by Yichen Wang <wangych@bu.edu> 2022-06-28 16:52:12 -0400;
  • 976db8699 Added more unit tests by Yichen Wang <wangych@bu.edu> 2022-06-28 16:51:30 -0400;
  • cb664b173 Merge remote-tracking branch 'bioc/master' into devel by Yichen Wang <wangych@bu.edu> 2022-06-28 11:58:58 -0400;
  • 2b06c0eeb roxygen by Yichen Wang <wangych@bu.edu> 2022-06-25 18:18:49 -0400;
  • 2f8d6a0ef Update documentation, together with minor bug fixes by Yichen Wang <wangych@bu.edu> 2022-06-25 17:35:08 -0400;
  • b8cd44998 Update documentation of workflow related to new HVG and scaling scheme by Yichen Wang <wangych@bu.edu> 2022-06-23 17:59:06 -0400;
  • 18a0f0e66 Fix CHECK and BiocCheck by Yichen Wang <wangych@bu.edu> 2022-06-23 10:38:52 -0400;
  • 408838a08 upgrade R 4.2.0 by Yichen Wang <wangych@bu.edu> 2022-06-22 21:49:13 -0400;
  • bf4524f08 Refine changes previously made, and minor bug fixes by Yichen Wang <wangych@bu.edu> 2022-06-22 16:55:48 -0400;
  • d3b410fce Update UI according to the last commit by Yichen Wang <wangych@bu.edu> 2022-06-18 08:35:21 -0400;
  • 007a2c8d7 Efficiency and user experience improvement & BUG fixes for TSCAN workflow by Yichen Wang <wangych@bu.edu> 2022-06-16 14:54:41 -0400;
  • 497cbfb4a Reformat the use of withConsoleMastRedirect; A few UI bug fixes by Yichen Wang <wangych@bu.edu> 2022-06-14 13:30:54 -0400;
  • d401387bc Merge branch 'devel' of https://github.com/compbiomed/singleCellTK into devel by Yichen Wang <wangych@bu.edu> 2022-06-12 11:04:58 -0400;
  • fadfb773d Minor UI fixes by Yichen Wang <wangych@bu.edu> 2022-06-12 11:03:33 -0400;
  • b0f8638d1 Merge pull request <a href="#600">#600</a> from npervaiz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-06-11 17:40:49 -0400;
  • 388b4b98b minor tweak fixed by nida pervaiz <nidapervaiz27@gmail.com> 2022-06-10 11:28:31 +0200;
  • cc19b5c6d Merge branch 'devel' of https://github.com/npervaiz/singleCellTK into devel by nida pervaiz <nidapervaiz27@gmail.com> 2022-06-10 10:55:45 +0200;
  • 9f17a6fbf Import data UI modified by nida pervaiz <nidapervaiz27@gmail.com> 2022-06-10 10:55:33 +0200;
  • 3bf995b93 Merge pull request <a href="#599">#599</a> from mvfki/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-06-09 09:21:22 -0400;
  • 4ec62125d Finished a la carte workflow UI+console tutorial by Yichen Wang <wangych@bu.edu> 2022-06-07 22:26:15 -0400;
  • 645f92e93 IMPORTANT BUG FIXES by Yichen Wang <wangych@bu.edu> 2022-06-06 09:50:41 -0400;
  • c60f1a842 Merge upstream and fix conflict by Yichen Wang <wangych@bu.edu> 2022-06-01 15:35:21 -0400;
  • ecc0e9c22 Update A La Carte Workflow tutorial UI part by Yichen Wang <wangych@bu.edu> 2022-06-01 15:17:48 -0400;
  • 278fde5ad Merge pull request <a href="#598">#598</a> from irzamsarfraz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-06-01 10:09:50 -0400;
  • e44c3271e doc fixes by Irzam Sarfraz <irzam9095@gmail.com> 2022-06-01 17:17:15 +0500;
  • 7b825068b Re-indent and re-format code by Irzam Sarfraz <irzam9095@gmail.com> 2022-06-01 12:29:08 +0500;
  • 33be31605 Minor fixes by Irzam Sarfraz <irzam9095@gmail.com> 2022-06-01 12:24:51 +0500;
  • 66ec07425 Updates to seurat scaling by Irzam Sarfraz <irzam9095@gmail.com> 2022-06-01 02:42:50 +0500;
  • 71ca39808 Merge remote-tracking branch 'upstream/devel' into devel by Irzam Sarfraz <irzam9095@gmail.com> 2022-06-01 00:19:38 +0500;
  • 2939876e9 Some fixes due to new seurat scaling mechanism by Irzam Sarfraz <irzam9095@gmail.com> 2022-06-01 00:18:33 +0500;
  • cd24c4e75 Update feature selection related functions by Yichen Wang <wangych@bu.edu> 2022-05-30 18:53:42 -0400;
  • ce2f68ec4 Fixed seurat scale data by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-30 01:23:23 +0500;
  • e6aed25ce Merge branch 'devel' of https://github.com/compbiomed/singleCellTK into devel by Yichen Wang <wangych@bu.edu> 2022-05-29 16:18:13 -0400;
  • 3ca054ed9 Updating A La Carte Workflow Tutorial by Yichen Wang <wangych@bu.edu> 2022-05-29 16:18:04 -0400;
  • 14e9c5c5e Merge pull request <a href="#597">#597</a> from npervaiz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-05-26 18:00:32 -0400;
  • 09a8d3ee0 TSCAN example case bug fixed by nida pervaiz <nidapervaiz27@gmail.com> 2022-05-26 19:22:30 +0500;
  • 99cbb22d9 Fixed conflicts by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-24 21:21:23 +0500;
  • 196fd25ba Some updates by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-24 20:25:29 +0500;
  • d11fa26f1 Merge pull request <a href="#596">#596</a> from mvfki/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-05-24 10:17:23 -0400;
  • 989bff0c2 Fix check error by Yichen Wang <wangych@bu.edu> 2022-05-23 17:44:30 -0400;
  • 4611a40da Add params of dimreduce to metadata & minor updates for clustering funcs by Yichen Wang <wangych@bu.edu> 2022-05-23 17:23:14 -0400;
  • 87eb03afa Update HVG PCA UMAP cluster UI by Yichen Wang <wangych@bu.edu> 2022-05-23 14:48:24 -0400;
  • 57aa02ae8 re-enabled seurat tab lock by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-21 14:52:20 +0500;
  • 6d75dab33 Run scaling on the go for seurat tab by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-21 03:22:54 +0500;
  • 3269f038a Merge upstream and fix conflicts by Yichen Wang <wangych@bu.edu> 2022-05-20 10:24:52 -0400;
  • 3c69e4889 Add UI tutorial screenshots by Yichen Wang <wangych@bu.edu> 2022-05-20 10:21:21 -0400;
  • 4455e6264 Draft UI tutorial by Yichen Wang <wangych@bu.edu> 2022-05-20 10:19:31 -0400;
  • ef10cb29e Function updates for HVG, PCA, UMAP and TSNE by Yichen Wang <wangych@bu.edu> 2022-05-20 10:07:18 -0400;
  • 4fa83ae41 Updates by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-20 00:26:43 +0500;
  • 3ea40042f Merge pull request <a href="#594">#594</a> from npervaiz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-05-19 10:38:58 -0400;
  • 92aa5f955 edits in notification spinner by nida pervaiz <nidapervaiz27@gmail.com> 2022-05-19 17:08:55 +0500;
  • 158a64f6b notification spinner in UI with minor changes by nida pervaiz <nidapervaiz27@gmail.com> 2022-05-19 17:00:46 +0500;
  • 15bce2589 notification spinner added to UI by nida pervaiz <nidapervaiz27@gmail.com> 2022-05-18 21:31:57 +0500;
  • c47365603 Fix R CMD check error by Yichen Wang <wangych@bu.edu> 2022-05-13 19:29:45 -0400;
  • 51b7baf6d Update doc accordingly by Yichen Wang <wangych@bu.edu> 2022-05-13 18:20:07 -0400;
  • 725ad206d Update volcano plot func to support featureDisplay setting; update this feature for all other DEG UI by Yichen Wang <wangych@bu.edu> 2022-05-13 17:50:39 -0400;
  • 5dc5938b9 apply global displayFeature setting to DEG heatmap by Yichen Wang <wangych@bu.edu> 2022-05-13 16:07:00 -0400;
  • 4bbed9d93 Update clustering documentation accordingly by Yichen Wang <wangych@bu.edu> 2022-05-12 17:35:00 -0400;
  • 6a491cbdf Update clustering UI accordingly by Yichen Wang <wangych@bu.edu> 2022-05-12 12:40:10 -0400;
  • 6260d088b Merge branch 'devel' of https://github.com/compbiomed/singleCellTK into devel by Yichen Wang <wangych@bu.edu> 2022-05-11 17:30:49 -0400;
  • 3d74f74e0 Add Leiden option for runScranSNN; related bug fixes by Yichen Wang <wangych@bu.edu> 2022-05-11 17:30:32 -0400;
  • 9bc8dee72 Merge pull request <a href="#593">#593</a> from npervaiz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-05-11 16:15:09 -0400;
  • 17197cc98 New example dataset added by nida pervaiz <nidapervaiz27@gmail.com> 2022-05-11 13:45:43 +0500;
  • c31c1d25f Merge upstream by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-05 21:00:44 +0500;
  • b5237f8df import new example data by nida pervaiz <nidapervaiz27@gmail.com> 2022-05-05 18:34:40 +0500;
  • 17dd5b6c8 Minor update by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-03 16:01:13 +0500;
  • 4f4861925 Updates to module filter by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-03 14:53:06 +0500;
  • dd7d0e0ab Added module filter to diffex by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-02 03:01:59 +0500;
  • 19d2be3d3 Updates to module filter and added it to find markers tab by Irzam Sarfraz <irzam9095@gmail.com> 2022-05-01 21:39:46 +0500;
  • 07829f442 Merge pull request <a href="#591">#591</a> from npervaiz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-04-29 19:08:42 -0400;
  • f34b2ba63 edits in TSCAN function name by nida pervaiz <nidapervaiz27@gmail.com> 2022-04-29 21:27:18 +0500;
  • 752178305 documentation edits by nida pervaiz <nidapervaiz27@gmail.com> 2022-04-29 15:21:57 +0500;
  • 2aa4daf29 Merge branch 'devel' into devel by npervaiz <36128281+npervaiz@users.noreply.github.com> 2022-04-29 14:24:35 +0500;
  • 884944b66 documentation of TSCAN added by nida pervaiz <nidapervaiz27@gmail.com> 2022-04-29 11:58:27 +0500;
  • ffd573724 Merge branch 'master' into devel by Yichen Wang <wangych@bu.edu> 2022-04-28 12:22:52 -0400;
  • 1bd1eb064 new version 2.6.0 by Yichen Wang <wangych@bu.edu> 2022-04-28 12:21:44 -0400;
  • b95f0e4c8 Merge pull request <a href="#589">#589</a> from salzcamino/master by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-04-27 14:49:21 -0400;
  • 1b5bcd6bf Merge pull request <a href="#35">#35</a> from compbiomed/devel by Salam AlAbdullatif <salamha@bu.edu> 2022-04-27 11:50:21 -0400;
  • a360ad897 fix seurat report knit error by salzcamino <salamha@bu.edu> 2022-04-27 11:46:39 -0400;
  • 68603b62e Merge pull request <a href="#34">#34</a> from compbiomed/master by Salam AlAbdullatif <salamha@bu.edu> 2022-04-27 11:15:00 -0400;
  • 289be130d bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:48:48 +0000;
  • b6fc5364d (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:48:48 +0000;
  • 023e69999 Updates to seurat report by Irzam Sarfraz <irzam9095@gmail.com> 2022-04-26 16:26:15 +0500;
  • 4ff948d8b Merge pull request <a href="#588">#588</a> from irzamsarfraz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-04-23 09:52:29 -0400;
  • ec708e7db Minor updates to seurat reports by Irzam Sarfraz <irzam9095@gmail.com> 2022-04-23 16:37:33 +0500;
  • d3708c0c4 new version 2.5.2 by Yichen Wang <wangych@bu.edu> 2022-04-23 01:20:41 -0400;
  • 5da6199b5 Update diffexp and enrichR documentation by Yichen Wang <wangych@bu.edu> 2022-04-22 18:41:58 -0400;
  • 370755e16 Merge branch 'devel' of https://github.com/compbiomed/singleCellTK into devel by Yichen Wang <wangych@bu.edu> 2022-04-22 13:50:20 -0400;
  • 7af3c9542 Add new cut-offs for DE by Yichen Wang <wangych@bu.edu> 2022-04-22 13:48:59 -0400;
  • 0f64c81c4 Merge pull request <a href="#587">#587</a> from irzamsarfraz/devel by Joshua D. Campbell <joshua.d.campbell@gmail.com> 2022-04-22 10:28:19 -0400;
  • 4f5ccfe7e Minor updates to seurat reports by Irzam Sarfraz <irzam9095@gmail.com> 2022-04-22 15:26:55 +0500;
  • bbffe107c Resolve R CMD check and BiocCheck issues by Yichen Wang <wangych@bu.edu> 2022-04-22 00:17:48 -0400;
  • 1950c5726 Refactor EnrichR UI by Yichen Wang <wangych@bu.edu> 2022-04-21 23:18:06 -0400;
  • 4e88858a3 Updates to seurat reports by Irzam Sarfraz <irzam9095@gmail.com> 2022-04-22 02:36:56 +0500;