Irzam Sarfraz authored on 19/09/2022 15:51:41
| ... | ... |
@@ -1,6 +1,6 @@ |
| 1 | 1 |
{
|
| 2 | 2 |
"R": {
|
| 3 |
- "Version": "4.1.0", |
|
| 3 |
+ "Version": "4.2.1", |
|
| 4 | 4 |
"Repositories": [ |
| 5 | 5 |
{
|
| 6 | 6 |
"Name": "BioCsoft", |
| ... | ... |
@@ -29,2929 +29,5574 @@ |
| 29 | 29 |
] |
| 30 | 30 |
}, |
| 31 | 31 |
"Bioconductor": {
|
| 32 |
- "Version": "3.13" |
|
| 32 |
+ "Version": "3.15" |
|
| 33 | 33 |
}, |
| 34 | 34 |
"Packages": {
|
| 35 | 35 |
"AnnotationDbi": {
|
| 36 | 36 |
"Package": "AnnotationDbi", |
| 37 |
- "Version": "1.54.1", |
|
| 37 |
+ "Version": "1.58.0", |
|
| 38 | 38 |
"Source": "Bioconductor", |
| 39 |
- "Hash": "5c5813b294bf80a7664ffbaea0e719ba" |
|
| 39 |
+ "git_url": "https://git.bioconductor.org/packages/AnnotationDbi", |
|
| 40 |
+ "git_branch": "RELEASE_3_15", |
|
| 41 |
+ "git_last_commit": "05fcf7a", |
|
| 42 |
+ "git_last_commit_date": "2022-04-26", |
|
| 43 |
+ "Hash": "106e57984a3dd77bd060133fa4cccf58", |
|
| 44 |
+ "Requirements": [ |
|
| 45 |
+ "Biobase", |
|
| 46 |
+ "BiocGenerics", |
|
| 47 |
+ "DBI", |
|
| 48 |
+ "IRanges", |
|
| 49 |
+ "KEGGREST", |
|
| 50 |
+ "RSQLite", |
|
| 51 |
+ "S4Vectors" |
|
| 52 |
+ ] |
|
| 40 | 53 |
}, |
| 41 | 54 |
"AnnotationFilter": {
|
| 42 | 55 |
"Package": "AnnotationFilter", |
| 43 |
- "Version": "1.16.0", |
|
| 56 |
+ "Version": "1.20.0", |
|
| 44 | 57 |
"Source": "Bioconductor", |
| 45 |
- "Hash": "ad27d515ff1cac41ecaf5e1e5837a0f8" |
|
| 58 |
+ "git_url": "https://git.bioconductor.org/packages/AnnotationFilter", |
|
| 59 |
+ "git_branch": "RELEASE_3_15", |
|
| 60 |
+ "git_last_commit": "2818aff", |
|
| 61 |
+ "git_last_commit_date": "2022-04-26", |
|
| 62 |
+ "Hash": "ecc8df33742300e5d69003d7f308226a", |
|
| 63 |
+ "Requirements": [ |
|
| 64 |
+ "GenomicRanges", |
|
| 65 |
+ "lazyeval" |
|
| 66 |
+ ] |
|
| 46 | 67 |
}, |
| 47 | 68 |
"AnnotationHub": {
|
| 48 | 69 |
"Package": "AnnotationHub", |
| 49 |
- "Version": "3.0.1", |
|
| 70 |
+ "Version": "3.4.0", |
|
| 50 | 71 |
"Source": "Bioconductor", |
| 51 |
- "Hash": "36d1cc3c7c186d2ec894e0835a0e611a" |
|
| 72 |
+ "git_url": "https://git.bioconductor.org/packages/AnnotationHub", |
|
| 73 |
+ "git_branch": "RELEASE_3_15", |
|
| 74 |
+ "git_last_commit": "e74e54c", |
|
| 75 |
+ "git_last_commit_date": "2022-04-26", |
|
| 76 |
+ "Hash": "9e6dd4e9cf2b733f1cd4c4aa084bb9e8", |
|
| 77 |
+ "Requirements": [ |
|
| 78 |
+ "AnnotationDbi", |
|
| 79 |
+ "BiocFileCache", |
|
| 80 |
+ "BiocGenerics", |
|
| 81 |
+ "BiocManager", |
|
| 82 |
+ "BiocVersion", |
|
| 83 |
+ "RSQLite", |
|
| 84 |
+ "S4Vectors", |
|
| 85 |
+ "curl", |
|
| 86 |
+ "dplyr", |
|
| 87 |
+ "httr", |
|
| 88 |
+ "interactiveDisplayBase", |
|
| 89 |
+ "rappdirs", |
|
| 90 |
+ "yaml" |
|
| 91 |
+ ] |
|
| 52 | 92 |
}, |
| 53 | 93 |
"BH": {
|
| 54 | 94 |
"Package": "BH", |
| 55 |
- "Version": "1.75.0-0", |
|
| 95 |
+ "Version": "1.78.0-0", |
|
| 56 | 96 |
"Source": "Repository", |
| 57 | 97 |
"Repository": "CRAN", |
| 58 |
- "Hash": "e4c04affc2cac20c8fec18385cd14691" |
|
| 98 |
+ "Hash": "4e348572ffcaa2fb1e610e7a941f6f3a", |
|
| 99 |
+ "Requirements": [] |
|
| 59 | 100 |
}, |
| 60 | 101 |
"Biobase": {
|
| 61 | 102 |
"Package": "Biobase", |
| 62 |
- "Version": "2.52.0", |
|
| 103 |
+ "Version": "2.56.0", |
|
| 63 | 104 |
"Source": "Bioconductor", |
| 64 |
- "Hash": "416e5025920f5c337ca9d67954332d2c" |
|
| 65 |
- }, |
|
| 66 |
- "BiocCheck": {
|
|
| 67 |
- "Package": "BiocCheck", |
|
| 68 |
- "Version": "1.28.0", |
|
| 69 |
- "Source": "Bioconductor", |
|
| 70 |
- "Hash": "4ef2f7078444a903874d1323cc39a931" |
|
| 105 |
+ "git_url": "https://git.bioconductor.org/packages/Biobase", |
|
| 106 |
+ "git_branch": "RELEASE_3_15", |
|
| 107 |
+ "git_last_commit": "3b2dd91", |
|
| 108 |
+ "git_last_commit_date": "2022-04-26", |
|
| 109 |
+ "Hash": "b58c1eb25be406d1a35dd4cff0e9ba2e", |
|
| 110 |
+ "Requirements": [ |
|
| 111 |
+ "BiocGenerics" |
|
| 112 |
+ ] |
|
| 71 | 113 |
}, |
| 72 | 114 |
"BiocFileCache": {
|
| 73 | 115 |
"Package": "BiocFileCache", |
| 74 |
- "Version": "2.0.0", |
|
| 116 |
+ "Version": "2.4.0", |
|
| 75 | 117 |
"Source": "Bioconductor", |
| 76 |
- "Hash": "2e3adce062cf5a915a4268705f989390" |
|
| 118 |
+ "git_url": "https://git.bioconductor.org/packages/BiocFileCache", |
|
| 119 |
+ "git_branch": "RELEASE_3_15", |
|
| 120 |
+ "git_last_commit": "2c00eee", |
|
| 121 |
+ "git_last_commit_date": "2022-04-26", |
|
| 122 |
+ "Hash": "450e5bba6c68cbab059b39f88b740ade", |
|
| 123 |
+ "Requirements": [ |
|
| 124 |
+ "DBI", |
|
| 125 |
+ "RSQLite", |
|
| 126 |
+ "curl", |
|
| 127 |
+ "dbplyr", |
|
| 128 |
+ "dplyr", |
|
| 129 |
+ "filelock", |
|
| 130 |
+ "httr", |
|
| 131 |
+ "rappdirs" |
|
| 132 |
+ ] |
|
| 77 | 133 |
}, |
| 78 | 134 |
"BiocGenerics": {
|
| 79 | 135 |
"Package": "BiocGenerics", |
| 80 |
- "Version": "0.38.0", |
|
| 136 |
+ "Version": "0.42.0", |
|
| 81 | 137 |
"Source": "Bioconductor", |
| 82 |
- "Hash": "de5e346fed0fc44a0424a0531cf5d12d" |
|
| 138 |
+ "git_url": "https://git.bioconductor.org/packages/BiocGenerics", |
|
| 139 |
+ "git_branch": "RELEASE_3_15", |
|
| 140 |
+ "git_last_commit": "3582d47", |
|
| 141 |
+ "git_last_commit_date": "2022-04-26", |
|
| 142 |
+ "Hash": "37348ee784e82c0a6b650146275b459d", |
|
| 143 |
+ "Requirements": [] |
|
| 83 | 144 |
}, |
| 84 | 145 |
"BiocIO": {
|
| 85 | 146 |
"Package": "BiocIO", |
| 86 |
- "Version": "1.2.0", |
|
| 147 |
+ "Version": "1.6.0", |
|
| 87 | 148 |
"Source": "Bioconductor", |
| 88 |
- "Hash": "94ab7dee64234bc6c820f34e0bb357fa" |
|
| 149 |
+ "git_url": "https://git.bioconductor.org/packages/BiocIO", |
|
| 150 |
+ "git_branch": "RELEASE_3_15", |
|
| 151 |
+ "git_last_commit": "60c8aa1", |
|
| 152 |
+ "git_last_commit_date": "2022-04-26", |
|
| 153 |
+ "Hash": "2f96961b653e126bfca131ede146a613", |
|
| 154 |
+ "Requirements": [ |
|
| 155 |
+ "BiocGenerics", |
|
| 156 |
+ "S4Vectors" |
|
| 157 |
+ ] |
|
| 89 | 158 |
}, |
| 90 | 159 |
"BiocManager": {
|
| 91 | 160 |
"Package": "BiocManager", |
| 92 |
- "Version": "1.30.16", |
|
| 161 |
+ "Version": "1.30.18", |
|
| 93 | 162 |
"Source": "Repository", |
| 94 | 163 |
"Repository": "CRAN", |
| 95 |
- "Hash": "2fdca0877debdd4668190832cdee4c31" |
|
| 164 |
+ "Hash": "b1a93bed5debda5775636086fdca017b", |
|
| 165 |
+ "Requirements": [] |
|
| 96 | 166 |
}, |
| 97 | 167 |
"BiocNeighbors": {
|
| 98 | 168 |
"Package": "BiocNeighbors", |
| 99 |
- "Version": "1.10.0", |
|
| 169 |
+ "Version": "1.14.0", |
|
| 100 | 170 |
"Source": "Bioconductor", |
| 101 |
- "Hash": "41adf63d6241d72adc0ac4b6d458279b" |
|
| 171 |
+ "git_url": "https://git.bioconductor.org/packages/BiocNeighbors", |
|
| 172 |
+ "git_branch": "RELEASE_3_15", |
|
| 173 |
+ "git_last_commit": "670a1bd", |
|
| 174 |
+ "git_last_commit_date": "2022-04-26", |
|
| 175 |
+ "Hash": "2892f03f485df26196566e41fa490211", |
|
| 176 |
+ "Requirements": [ |
|
| 177 |
+ "BiocParallel", |
|
| 178 |
+ "Matrix", |
|
| 179 |
+ "Rcpp", |
|
| 180 |
+ "RcppHNSW", |
|
| 181 |
+ "S4Vectors" |
|
| 182 |
+ ] |
|
| 102 | 183 |
}, |
| 103 | 184 |
"BiocParallel": {
|
| 104 | 185 |
"Package": "BiocParallel", |
| 105 |
- "Version": "1.26.1", |
|
| 186 |
+ "Version": "1.30.3", |
|
| 106 | 187 |
"Source": "Bioconductor", |
| 107 |
- "Hash": "9b5f507fed616566984c90c2b321ec00" |
|
| 188 |
+ "git_url": "https://git.bioconductor.org/packages/BiocParallel", |
|
| 189 |
+ "git_branch": "RELEASE_3_15", |
|
| 190 |
+ "git_last_commit": "f753ae8", |
|
| 191 |
+ "git_last_commit_date": "2022-06-04", |
|
| 192 |
+ "Hash": "6679083c9b26ccd9f474ac5ad0bf5ea6", |
|
| 193 |
+ "Requirements": [ |
|
| 194 |
+ "BH", |
|
| 195 |
+ "codetools", |
|
| 196 |
+ "futile.logger", |
|
| 197 |
+ "snow" |
|
| 198 |
+ ] |
|
| 108 | 199 |
}, |
| 109 | 200 |
"BiocSingular": {
|
| 110 | 201 |
"Package": "BiocSingular", |
| 111 |
- "Version": "1.8.1", |
|
| 202 |
+ "Version": "1.12.0", |
|
| 112 | 203 |
"Source": "Bioconductor", |
| 113 |
- "Hash": "0d5762a2e3a3ba0334c4d58c5a0aac35" |
|
| 204 |
+ "git_url": "https://git.bioconductor.org/packages/BiocSingular", |
|
| 205 |
+ "git_branch": "RELEASE_3_15", |
|
| 206 |
+ "git_last_commit": "7d1b8f4", |
|
| 207 |
+ "git_last_commit_date": "2022-04-26", |
|
| 208 |
+ "Hash": "33c264615f520d023d83d68880a853b8", |
|
| 209 |
+ "Requirements": [ |
|
| 210 |
+ "BiocGenerics", |
|
| 211 |
+ "BiocParallel", |
|
| 212 |
+ "DelayedArray", |
|
| 213 |
+ "Matrix", |
|
| 214 |
+ "Rcpp", |
|
| 215 |
+ "S4Vectors", |
|
| 216 |
+ "ScaledMatrix", |
|
| 217 |
+ "beachmat", |
|
| 218 |
+ "irlba", |
|
| 219 |
+ "rsvd" |
|
| 220 |
+ ] |
|
| 114 | 221 |
}, |
| 115 | 222 |
"BiocStyle": {
|
| 116 | 223 |
"Package": "BiocStyle", |
| 117 |
- "Version": "2.20.2", |
|
| 224 |
+ "Version": "2.24.0", |
|
| 118 | 225 |
"Source": "Bioconductor", |
| 119 |
- "Hash": "d834ffcaa5c84ae5e8a2147abff3c17f" |
|
| 226 |
+ "git_url": "https://git.bioconductor.org/packages/BiocStyle", |
|
| 227 |
+ "git_branch": "RELEASE_3_15", |
|
| 228 |
+ "git_last_commit": "53095b5", |
|
| 229 |
+ "git_last_commit_date": "2022-04-26", |
|
| 230 |
+ "Hash": "7ba75b2a79d4efbf69dbcfc9334b5fa3", |
|
| 231 |
+ "Requirements": [ |
|
| 232 |
+ "BiocManager", |
|
| 233 |
+ "bookdown", |
|
| 234 |
+ "knitr", |
|
| 235 |
+ "rmarkdown", |
|
| 236 |
+ "yaml" |
|
| 237 |
+ ] |
|
| 120 | 238 |
}, |
| 121 | 239 |
"BiocVersion": {
|
| 122 | 240 |
"Package": "BiocVersion", |
| 123 |
- "Version": "3.13.1", |
|
| 241 |
+ "Version": "3.15.2", |
|
| 124 | 242 |
"Source": "Bioconductor", |
| 125 |
- "Hash": "94abf4508341d86378c2a78d219b3fca" |
|
| 243 |
+ "git_url": "https://git.bioconductor.org/packages/BiocVersion", |
|
| 244 |
+ "git_branch": "master", |
|
| 245 |
+ "git_last_commit": "818ab03", |
|
| 246 |
+ "git_last_commit_date": "2022-03-29", |
|
| 247 |
+ "Hash": "48e545a2fa24a967de72b1114bfe96ac", |
|
| 248 |
+ "Requirements": [] |
|
| 126 | 249 |
}, |
| 127 | 250 |
"Biostrings": {
|
| 128 | 251 |
"Package": "Biostrings", |
| 129 |
- "Version": "2.60.1", |
|
| 252 |
+ "Version": "2.64.1", |
|
| 130 | 253 |
"Source": "Bioconductor", |
| 131 |
- "Hash": "ee27fadce643ce9df34bb1778748af38" |
|
| 132 |
- }, |
|
| 133 |
- "Cairo": {
|
|
| 134 |
- "Package": "Cairo", |
|
| 135 |
- "Version": "1.5-12.2", |
|
| 136 |
- "Source": "Repository", |
|
| 137 |
- "Repository": "CRAN", |
|
| 138 |
- "Hash": "5f09ea90a07218b11c6430b7ca71fee7" |
|
| 139 |
- }, |
|
| 140 |
- "ClusterR": {
|
|
| 141 |
- "Package": "ClusterR", |
|
| 142 |
- "Version": "1.2.5", |
|
| 143 |
- "Source": "Repository", |
|
| 144 |
- "Repository": "CRAN", |
|
| 145 |
- "Hash": "3b0b44e93ef5c63c25f36cb49b1d2196" |
|
| 254 |
+ "git_url": "https://git.bioconductor.org/packages/Biostrings", |
|
| 255 |
+ "git_branch": "RELEASE_3_15", |
|
| 256 |
+ "git_last_commit": "ffe263e", |
|
| 257 |
+ "git_last_commit_date": "2022-08-17", |
|
| 258 |
+ "Hash": "f2695988e34d82e7ed97371fb7d66170", |
|
| 259 |
+ "Requirements": [ |
|
| 260 |
+ "BiocGenerics", |
|
| 261 |
+ "GenomeInfoDb", |
|
| 262 |
+ "IRanges", |
|
| 263 |
+ "S4Vectors", |
|
| 264 |
+ "XVector", |
|
| 265 |
+ "crayon" |
|
| 266 |
+ ] |
|
| 146 | 267 |
}, |
| 147 | 268 |
"ComplexHeatmap": {
|
| 148 | 269 |
"Package": "ComplexHeatmap", |
| 149 |
- "Version": "2.8.0", |
|
| 270 |
+ "Version": "2.12.0", |
|
| 150 | 271 |
"Source": "Bioconductor", |
| 151 |
- "Hash": "789f595457ade53eb79e5d467afc33af" |
|
| 272 |
+ "git_url": "https://git.bioconductor.org/packages/ComplexHeatmap", |
|
| 273 |
+ "git_branch": "RELEASE_3_15", |
|
| 274 |
+ "git_last_commit": "8a5f060", |
|
| 275 |
+ "git_last_commit_date": "2022-04-26", |
|
| 276 |
+ "Hash": "dfc85f03afca224993b96d7b87577153", |
|
| 277 |
+ "Requirements": [ |
|
| 278 |
+ "GetoptLong", |
|
| 279 |
+ "GlobalOptions", |
|
| 280 |
+ "IRanges", |
|
| 281 |
+ "RColorBrewer", |
|
| 282 |
+ "circlize", |
|
| 283 |
+ "clue", |
|
| 284 |
+ "codetools", |
|
| 285 |
+ "colorspace", |
|
| 286 |
+ "digest", |
|
| 287 |
+ "doParallel", |
|
| 288 |
+ "foreach", |
|
| 289 |
+ "matrixStats", |
|
| 290 |
+ "png" |
|
| 291 |
+ ] |
|
| 152 | 292 |
}, |
| 153 | 293 |
"DBI": {
|
| 154 | 294 |
"Package": "DBI", |
| 155 |
- "Version": "1.1.1", |
|
| 295 |
+ "Version": "1.1.3", |
|
| 156 | 296 |
"Source": "Repository", |
| 157 | 297 |
"Repository": "CRAN", |
| 158 |
- "Hash": "030aaec5bc6553f35347cbb1e70b1a17" |
|
| 298 |
+ "Hash": "b2866e62bab9378c3cc9476a1954226b", |
|
| 299 |
+ "Requirements": [] |
|
| 159 | 300 |
}, |
| 160 | 301 |
"DESeq2": {
|
| 161 | 302 |
"Package": "DESeq2", |
| 162 |
- "Version": "1.32.0", |
|
| 303 |
+ "Version": "1.36.0", |
|
| 163 | 304 |
"Source": "Bioconductor", |
| 164 |
- "Hash": "d09f122289f9f80b45fc6c054930a63d" |
|
| 305 |
+ "git_url": "https://git.bioconductor.org/packages/DESeq2", |
|
| 306 |
+ "git_branch": "RELEASE_3_15", |
|
| 307 |
+ "git_last_commit": "2800b78", |
|
| 308 |
+ "git_last_commit_date": "2022-04-26", |
|
| 309 |
+ "Hash": "86ab1f2e3a303a1e0cebf0ef979d53bf", |
|
| 310 |
+ "Requirements": [ |
|
| 311 |
+ "Biobase", |
|
| 312 |
+ "BiocGenerics", |
|
| 313 |
+ "BiocParallel", |
|
| 314 |
+ "GenomicRanges", |
|
| 315 |
+ "IRanges", |
|
| 316 |
+ "Rcpp", |
|
| 317 |
+ "RcppArmadillo", |
|
| 318 |
+ "S4Vectors", |
|
| 319 |
+ "SummarizedExperiment", |
|
| 320 |
+ "genefilter", |
|
| 321 |
+ "geneplotter", |
|
| 322 |
+ "ggplot2", |
|
| 323 |
+ "locfit" |
|
| 324 |
+ ] |
|
| 325 |
+ }, |
|
| 326 |
+ "DEoptimR": {
|
|
| 327 |
+ "Package": "DEoptimR", |
|
| 328 |
+ "Version": "1.0-11", |
|
| 329 |
+ "Source": "Repository", |
|
| 330 |
+ "Repository": "CRAN", |
|
| 331 |
+ "Hash": "b18b34cfbf932e17803c2e3e4b1a2d2a", |
|
| 332 |
+ "Requirements": [] |
|
| 165 | 333 |
}, |
| 166 | 334 |
"DT": {
|
| 167 | 335 |
"Package": "DT", |
| 168 |
- "Version": "0.18", |
|
| 336 |
+ "Version": "0.23", |
|
| 169 | 337 |
"Source": "Repository", |
| 170 | 338 |
"Repository": "CRAN", |
| 171 |
- "Hash": "a7d6660c869d4f41f856504828af4645" |
|
| 339 |
+ "Hash": "d8f1498dc47763ce4647c8d03214d30b", |
|
| 340 |
+ "Requirements": [ |
|
| 341 |
+ "crosstalk", |
|
| 342 |
+ "htmltools", |
|
| 343 |
+ "htmlwidgets", |
|
| 344 |
+ "jquerylib", |
|
| 345 |
+ "jsonlite", |
|
| 346 |
+ "magrittr", |
|
| 347 |
+ "promises" |
|
| 348 |
+ ] |
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"Package": "DelayedArray", |
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+ "git_url": "https://git.bioconductor.org/packages/DelayedArray", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "4a5afd1", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "Matrix", |
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+ "MatrixGenerics", |
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+ "S4Vectors" |
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| 365 |
+ ] |
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}, |
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"Package": "DelayedMatrixStats", |
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+ "Version": "1.18.0", |
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+ "git_url": "https://git.bioconductor.org/packages/DelayedMatrixStats", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "50c9aab", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "Matrix", |
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+ "MatrixGenerics", |
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+ "S4Vectors", |
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+ "matrixStats", |
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+ "sparseMatrixStats" |
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+ ] |
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}, |
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"Package": "DropletUtils", |
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+ "git_url": "https://git.bioconductor.org/packages/DropletUtils", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "a08cd3b", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "BiocGenerics", |
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+ "BiocParallel", |
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+ "DelayedArray", |
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+ "DelayedMatrixStats", |
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+ "GenomicRanges", |
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+ "HDF5Array", |
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+ "IRanges", |
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+ "Matrix", |
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+ "R.utils", |
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+ "Rcpp", |
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+ "Rhdf5lib", |
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+ "S4Vectors", |
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+ "SingleCellExperiment", |
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+ "SummarizedExperiment", |
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+ "beachmat", |
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+ "dqrng", |
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+ "edgeR", |
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| 414 |
+ "rhdf5", |
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| 415 |
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| 416 |
+ ] |
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"Package": "ExperimentHub", |
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"Source": "Bioconductor", |
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- "Hash": "252f560f686dfba2e1e918f093b4fe3c" |
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+ "git_url": "https://git.bioconductor.org/packages/ExperimentHub", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "bdce35d", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "BiocFileCache", |
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+ "BiocGenerics", |
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+ "BiocManager", |
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+ "S4Vectors", |
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+ "curl", |
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| 434 |
+ "rappdirs" |
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| 435 |
+ ] |
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"Package": "FNN", |
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"Package": "Formula", |
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"Repository": "CRAN", |
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+ "Hash": "cc8c8c4d61346cde1ca60030ff9c241f", |
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"Package": "GSEABase", |
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"Source": "Bioconductor", |
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- "Hash": "75ca4356cf6c430097d6afe2feb7f347" |
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+ "git_url": "https://git.bioconductor.org/packages/GSEABase", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "7de0444", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "Hash": "08cda6d9e5330c303e23ab3e61613613", |
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+ "AnnotationDbi", |
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+ "Biobase", |
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+ "BiocGenerics", |
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+ "XML", |
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+ "annotate", |
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| 468 |
+ "graph" |
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| 469 |
+ ] |
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| 216 | 470 |
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"Package": "GSVA", |
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"Source": "Bioconductor", |
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- "Hash": "bf29b0aac0f823042aba4ac77741d1a5" |
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+ "git_url": "https://git.bioconductor.org/packages/GSVA", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "f4e0cc4", |
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+ "git_last_commit_date": "2022-06-09", |
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+ "Biobase", |
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+ "BiocParallel", |
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+ "BiocSingular", |
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+ "DelayedArray", |
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+ "DelayedMatrixStats", |
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+ "GSEABase", |
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+ "HDF5Array", |
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+ "IRanges", |
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+ "Matrix", |
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+ "SingleCellExperiment", |
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+ "SummarizedExperiment", |
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+ "sparseMatrixStats" |
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+ ] |
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"Package": "GSVAdata", |
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+ "git_url": "https://git.bioconductor.org/packages/GSVAdata", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "b4be326", |
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+ "git_last_commit_date": "2022-04-26", |
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"Package": "GenomeInfoDb", |
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+ "git_url": "https://git.bioconductor.org/packages/GenomeInfoDb", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "69df6a5", |
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+ "git_last_commit_date": "2022-09-06", |
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+ "GenomeInfoDbData", |
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+ ] |
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| 236 | 529 |
"Package": "GenomeInfoDbData", |
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"Package": "GenomicAlignments", |
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+ "Version": "1.32.0", |
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"Source": "Bioconductor", |
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+ "git_url": "https://git.bioconductor.org/packages/GenomicAlignments", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "7a660a9", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "BiocParallel", |
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+ "GenomicRanges", |
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+ "Rsamtools", |
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+ "SummarizedExperiment" |
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"Package": "GenomicFeatures", |
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+ "Version": "1.48.3", |
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| 250 | 559 |
"Source": "Bioconductor", |
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+ "git_url": "https://git.bioconductor.org/packages/GenomicFeatures", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "b0ddea0", |
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+ "git_last_commit_date": "2022-05-31", |
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| 252 | 582 |
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"Package": "GenomicRanges", |
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+ "Version": "1.48.0", |
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| 256 | 586 |
"Source": "Bioconductor", |
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+ "git_url": "https://git.bioconductor.org/packages/GenomicRanges", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "2bce608", |
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+ "git_last_commit_date": "2022-04-26", |
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+ "git_url": "https://git.bioconductor.org/packages/HDF5Array", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "d002fe7", |
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+ "git_branch": "RELEASE_3_15", |
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+ "git_last_commit": "ead506a", |
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+ "git_last_commit_date": "2022-08-17", |
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"Repository": "CRAN", |
| 303 |
- "Hash": "8dcfa99b14c296bc9f1fd64d52fd3ce7" |
|
| 699 |
+ "Hash": "8dcfa99b14c296bc9f1fd64d52fd3ce7", |
|
| 700 |
+ "Requirements": [] |
|
| 304 | 701 |
}, |
| 305 | 702 |
"M3Drop": {
|
| 306 | 703 |
"Package": "M3Drop", |
| 307 |
- "Version": "1.18.0", |
|
| 704 |
+ "Version": "1.22.0", |
|
| 308 | 705 |
"Source": "Bioconductor", |
| 309 |
- "Hash": "236030bbfdd9b6d70e6315a80046eca0" |
|
| 706 |
+ "git_url": "https://git.bioconductor.org/packages/M3Drop", |
|
| 707 |
+ "git_branch": "RELEASE_3_15", |
|
| 708 |
+ "git_last_commit": "251aea9", |
|
| 709 |
+ "git_last_commit_date": "2022-04-26", |
|
| 710 |
+ "Hash": "61619015223c805f2fd81af58cff4c85", |
|
| 711 |
+ "Requirements": [ |
|
| 712 |
+ "Hmisc", |
|
| 713 |
+ "Matrix", |
|
| 714 |
+ "RColorBrewer", |
|
| 715 |
+ "bbmle", |
|
| 716 |
+ "gplots", |
|
| 717 |
+ "irlba", |
|
| 718 |
+ "matrixStats", |
|
| 719 |
+ "numDeriv", |
|
| 720 |
+ "reldist", |
|
| 721 |
+ "statmod" |
|
| 722 |
+ ] |
|
| 310 | 723 |
}, |
| 311 | 724 |
"MASS": {
|
| 312 | 725 |
"Package": "MASS", |
| 313 |
- "Version": "7.3-54", |
|
| 726 |
+ "Version": "7.3-58.1", |
|
| 314 | 727 |
"Source": "Repository", |
| 315 | 728 |
"Repository": "CRAN", |
| 316 |
- "Hash": "0e59129db205112e3963904db67fd0dc" |
|
| 729 |
+ "Hash": "762e1804143a332333c054759f89a706", |
|
| 730 |
+ "Requirements": [] |
|
| 317 | 731 |
}, |
| 318 | 732 |
"MAST": {
|
| 319 | 733 |
"Package": "MAST", |
| 320 |
- "Version": "1.18.0", |
|
| 734 |
+ "Version": "1.22.0", |
|
| 321 | 735 |
"Source": "Bioconductor", |
| 322 |
- "Hash": "2b51931449ae62013a3da3921ef0bd9a" |
|
| 736 |
+ "git_url": "https://git.bioconductor.org/packages/MAST", |
|
| 737 |
+ "git_branch": "RELEASE_3_15", |
|
| 738 |
+ "git_last_commit": "d9fd0c9", |
|
| 739 |
+ "git_last_commit_date": "2022-04-26", |
|
| 740 |
+ "Hash": "834b563b41751c3e3b9dfbfd99e5bbe3", |
|
| 741 |
+ "Requirements": [ |
|
| 742 |
+ "Biobase", |
|
| 743 |
+ "BiocGenerics", |
|
| 744 |
+ "S4Vectors", |
|
| 745 |
+ "SingleCellExperiment", |
|
| 746 |
+ "SummarizedExperiment", |
|
| 747 |
+ "abind", |
|
| 748 |
+ "data.table", |
|
| 749 |
+ "ggplot2", |
|
| 750 |
+ "plyr", |
|
| 751 |
+ "progress", |
|
| 752 |
+ "reshape2", |
|
| 753 |
+ "stringr" |
|
| 754 |
+ ] |
|
| 323 | 755 |
}, |
| 324 | 756 |
"MCMCprecision": {
|
| 325 | 757 |
"Package": "MCMCprecision", |
| 326 | 758 |
"Version": "0.4.0", |
| 327 | 759 |
"Source": "Repository", |
| 328 | 760 |
"Repository": "CRAN", |
| 329 |
- "Hash": "d50ffbdbe3756ee77e5ae13d84dfcd3b" |
|
| 761 |
+ "Hash": "d50ffbdbe3756ee77e5ae13d84dfcd3b", |
|
| 762 |
+ "Requirements": [ |
|
| 763 |
+ "Matrix", |
|
| 764 |
+ "Rcpp", |
|
| 765 |
+ "RcppArmadillo", |
|
| 766 |
+ "RcppEigen", |
|
| 767 |
+ "RcppProgress", |
|
| 768 |
+ "combinat" |
|
| 769 |
+ ] |
|
| 330 | 770 |
}, |
| 331 | 771 |
"Matrix": {
|
| 332 | 772 |
"Package": "Matrix", |
| 333 |
- "Version": "1.3-4", |
|
| 773 |
+ "Version": "1.5-1", |
|
| 334 | 774 |
"Source": "Repository", |
| 335 | 775 |
"Repository": "CRAN", |
| 336 |
- "Hash": "4ed05e9c9726267e4a5872e09c04587c" |
|
| 776 |
+ "Hash": "539dc0c0c05636812f1080f473d2c177", |
|
| 777 |
+ "Requirements": [ |
|
| 778 |
+ "lattice" |
|
| 779 |
+ ] |
|
| 337 | 780 |
}, |
| 338 | 781 |
"MatrixGenerics": {
|
| 339 | 782 |
"Package": "MatrixGenerics", |
| 340 |
- "Version": "1.4.0", |
|
| 783 |
+ "Version": "1.8.0", |
|
| 341 | 784 |
"Source": "Bioconductor", |
| 342 |
- "Hash": "48cab247b8dbb0ee0d35e2b6cc1370d4" |
|
| 785 |
+ "git_url": "https://git.bioconductor.org/packages/MatrixGenerics", |
|
| 786 |
+ "git_branch": "RELEASE_3_15", |
|
| 787 |
+ "git_last_commit": "e4cc34d", |
|
| 788 |
+ "git_last_commit_date": "2022-04-26", |
|
| 789 |
+ "Hash": "68a6ed57fd9a1d0d6beea73507b3ff59", |
|
| 790 |
+ "Requirements": [ |
|
| 791 |
+ "matrixStats" |
|
| 792 |
+ ] |
|
| 343 | 793 |
}, |
| 344 | 794 |
"MatrixModels": {
|
| 345 | 795 |
"Package": "MatrixModels", |
| 346 |
- "Version": "0.5-0", |
|
| 796 |
+ "Version": "0.5-1", |
|
| 347 | 797 |
"Source": "Repository", |
| 348 | 798 |
"Repository": "CRAN", |
| 349 |
- "Hash": "366a8838782928e398b8762c932a42a3" |
|
| 799 |
+ "Hash": "963ab8fbaf980a5b081ed40419081439", |
|
| 800 |
+ "Requirements": [ |
|
| 801 |
+ "Matrix" |
|