                                     deleted file mode 100644
@@ -1,88 +0,0 @@
                                     -Changes in Version 2.2.2 (2021-10-10)
+                                    -
                                     -* Several enhancements, refactors, and bug fixes to the UI
                                     -* Refactor documentation and pkgdown site
                                     -* Added tutorials for R console analysis
                                     -* Updates to the UMAP generation in the SCTK-QC pipeline
                                     -* Addition of VAM to Pathway prediction tab
                                     -* Bug fix to the mitochondrial gene set functions
+                                    -
                                     -Changes in Version 2.1.3 (2021-05-14)
+                                    -
                                     -* Added diffAbundanceFET and plotClusterAbundance function
                                     -* Linked Shiny UI help buttons to new online help pages
                                     -* Several bug fixes
+                                    -
                                     -Changes in Version 2.0.2 (2021-05-08)
+                                    -
                                     -* Expanded convertSCEtoSeurat() function to copy additional data
                                     -* Updated and merged pkgdown docs
                                     -* Added HTML reports for Seurat curated workflow
                                     -* Refactor of Normalization UI
                                     -* Added generic wrapper function for dimensionality reduction
                                     -* Added tagging system for matrix type
                                     -* Several bug fixes
                                     -* Added missing documentation
                                     -* Added wrapper functions for normalization, dimensionality reduction and feature selection
                                     -* Added function seuratReport() to generate a seurat report from input SCE object
+                                    -
                                     -Changes in Version 2.0.1 (2021-01-07)
+                                    -
                                     -* Added cell type labeling functional, wrapping SingleR method
                                     -* Added cell type labeling UI under differential expression tab
                                     -* Added marker identification in Seurat workflow
+                                    -
                                     -Changes in Version 2.0.0 (2020-10-16)
+                                    -
                                     -* Added quality control (empty droplet detection, doublet detection, etc) functionality
                                     -* Ability to import data from varying preprocessing tools
                                     -* Ability to export SingleCellExperiment object as varying file types (flat file, Python anndata)
                                     -* Added functions for visualization of data
                                     -* New CellViewer functionality in UI
                                     -* Improvements to differential expression, now includes DESeq2, limma, ANOVA
                                     -* Incorporates Seurat workflow
+                                    -
                                     -Changes in Version 1.1.26 (2018-10-23)
+                                    -
                                     -* New UI design for the Differential Expression tab.
                                     -* New UI design for the Data Summary & Filtering tab.
                                     -* Support for additional assay modification including log transforming any assay and renaming assays.
                                     -* New function visPlot for creating scatterplots, boxplots, heatmaps, and barplots for custom gene sets.
                                     -* The Downsample tab now works on a generic counts matrix
                                     -* You can upload a SCtkExperiment object or a SingleCellExperiment object saved in an RDS file on the Upload tab.
                                     -* Differential Expression results can now be saved in the rowData of the object and loaded for later analysis.
                                     -* Improved ability to save a biomarker based on user options.
                                     -* The Differential Expression plot is not automatically created, for more user control with large datasets.
+                                    -
                                     -Changes in Version 1.1.3
+                                    -
                                     -* Improvements to plotting, change text size and hide labels in gsva plots.
                                     -* MAST violin and linear model plots are now more square when plotting less than 49 facets.
                                     -* Changed y axis label in plotBatchVariance to "Percent Explained Variation"
+                                    -
                                     -Changes in Version 1.1.2
+                                    -
                                     -* Ability to hide version number in the SCTK GUI.
+                                    -
                                     -Changes in Version 1.1.1
+                                    -
                                     -* Fixed a bug that would cause the diffex color bar to not display when special
                                     -characters were in the annotation.
+                                    -
                                     -Changes in Version 0.99.3
+                                    -
                                     -* Consistent use of camel case throughout package
+                                    -
                                     -Changes in Version 0.6.3
+                                    -
                                     -* Additional links to help documentation
                                     -* Example matrices on upload page.
+                                    -
                                     -Changes in Version 0.4.7
+                                    -
                                     -* Ability to download/reupload annotation data frame and convert annotations to
                                     -factors/numerics
+                                    -
                                     -Changes in Version 0.4.5
+                                    -
                                     -* Documentation updates to fix NOTES and pass BiocCheck

Converted NEWS to NEWS.md, updated sessionInfo heading in qc vignettes & turned off warnings in docs

version bump, rebuild docs, and NEWS update

new release 2.1.3

Merged NEWS and fix to gene set enrichment names

Fixed a bug and updated NEWS

new release 2.0.2

new release 2.0.1

add news

Minor fixes

Update NEWS

Added NEWS updates

Improvments to plotting

Modified y axis for batch effect plot

Ability to hide version number in the GUI

Consistent use of camel case throughout the app

Add additional links to help documentation throughout. Added descriptions and links to example matrices.

Allow interactive modifications to colData

Additional documentation and fix check issues