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README.md
[![Build Status](https://travis-ci.org/compbiomed/singleCellTK.svg?branch=master)](https://travis-ci.org/compbiomed/singleCellTK) # Single Cell TK (name will change) ## Installation singleCellTK is under development. You can install the development version from github: > Note: Some package dependencies require Bioconductor v3.4, > https://bioconductor.org/install/ ``` # install.packages("devtools") devtools::install_github("compbiomed/singleCellTK") ``` ## Develop singleCellTK To contribute to singleCellTK, follow these steps: __Note__: singleCellTK is developed to eventually be added to bioconductor. The current version of bioconductor works best with R >= 3.3.1 1. Fork the repo using the "Fork" button above. 2. Download a local copy of your forked repository "```git clone https://github.com/{username}/singleCellTK.git```" 3. Open Rstudio 4. Go to "File" -> "New Project" -> "Existing Directory" and select your git repository directory You can then make your changes and test your code using the Rstudio build tools. There is a lot of information about building packages available here: http://r-pkgs.had.co.nz/. Information about building shiny packages is available here: http://shiny.rstudio.com/tutorial/. When you are ready to upload your changes, commit them locally, push them to your forked repo, and make a pull request to the compbiomed repository. Report bugs and request features on our [GitHub issue tracker](https://github.com/compbiomed/singleCellTK/issues). Join us on [slack](https://compbiomed.slack.com/)!