... | ... |
@@ -57,7 +57,7 @@ Generally, a subset of features may represent the biological variation in the ov |
57 | 57 |
```{r, results='asis', warning=FALSE, message=FALSE, eval = !((runHVG && length(metadata(data)$seurat$obj@assays$RNA@var.features) > 0)) || forceRun} |
58 | 58 |
hvgParams <- list( |
59 | 59 |
inSCE = data, |
60 |
- hvgMethod = "vst", |
|
60 |
+ method = "vst", |
|
61 | 61 |
hvgNumber = variable.features) |
62 | 62 |
data <- do.call("runSeuratFindHVG", hvgParams) |
63 | 63 |
|