... | ... |
@@ -65,12 +65,6 @@ jobs: |
65 | 65 |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results |
66 | 66 |
path: check |
67 | 67 |
|
68 |
- - name: Run BiocCheck |
|
69 |
- run: | |
|
70 |
- BiocManager::install("BiocCheck") |
|
71 |
- library(BiocCheck) |
|
72 |
- BiocCheck(".") |
|
73 |
- shell: Rscript {0} |
|
74 | 68 |
|
75 | 69 |
- name: Run codecov |
76 | 70 |
run: | |
... | ... |
@@ -105,7 +105,7 @@ importMultipleSources <- function(allImportEntries, delayedArray = FALSE) { |
105 | 105 |
} |
106 | 106 |
else if(entry$type %in% c("rds", "files")){ |
107 | 107 |
# Check if tags already stored in uploaded rds/files |
108 |
- if(is.null(metadata(newSce)$assayType)){ |
|
108 |
+ if(is.null(S4Vectors::metadata(newSce)$assayType)){ |
|
109 | 109 |
try({ |
110 | 110 |
counts(newSce) |
111 | 111 |
newSce <- expSetDataTag( |