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BiocCheck fixing errors/warnings!

Irzam Sarfraz authored on 14/10/2021 10:24:48
Showing 4 changed files

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@@ -65,12 +65,6 @@ jobs:
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           name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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           path: check
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-      - name: Run BiocCheck
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-        run: |
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-          BiocManager::install("BiocCheck")
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-          library(BiocCheck)
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-          BiocCheck(".")
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-        shell: Rscript {0}
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       - name: Run codecov
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         run: |
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@@ -105,7 +105,7 @@ importMultipleSources <- function(allImportEntries, delayedArray = FALSE) {
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     }
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     else if(entry$type %in% c("rds", "files")){
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       # Check if tags already stored in uploaded rds/files
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-      if(is.null(metadata(newSce)$assayType)){
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+      if(is.null(S4Vectors::metadata(newSce)$assayType)){
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         try({
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           counts(newSce)
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           newSce <- expSetDataTag(
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@@ -233,4 +233,4 @@ nonLinearWorkflow <- function(input, output, session, parent,
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               select = TRUE,
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               session = parent)
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     })
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-}
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\ No newline at end of file
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+}
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@@ -307,4 +307,4 @@ shinyPanelFS_DimRed <- fluidPage(
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                       )))
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              ))
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   )
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-)
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\ No newline at end of file
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+)