Package: shinyepico
Title: ShinyÉPICo
Version: 1.11.0
Authors@R: person('Octavio', 'Morante-Palacios', email = 'octaviompa@gmail.com', role = c('cre', 'aut'))
Description: ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.
License: AGPL-3 + file LICENSE
Depends: R (>= 4.3.0)
Imports: 
    DT (>= 0.15.0),
    data.table (>= 1.13.0),
    doParallel (>= 1.0.0),
    dplyr (>= 1.0.9),
    foreach (>= 1.5.0),
    GenomicRanges (>= 1.38.0),
    ggplot2 (>= 3.3.0),
    gplots (>= 3.0.0),
    heatmaply (>= 1.1.0),
    limma (>= 3.42.0),
    minfi (>= 1.32.0),
    plotly (>= 4.9.2),
    reshape2 (>= 1.4.0),
    rlang (>= 1.0.2),
    rmarkdown (>= 2.3.0),
    rtracklayer (>= 1.46.0),
    shiny (>= 1.5.0),
    shinyWidgets (>= 0.5.0),
    shinycssloaders (>= 0.3.0),
    shinyjs (>= 1.1.0),
    shinythemes (>= 1.1.0),
    statmod (>= 1.4.0),
    tidyr (>= 1.2.0),
    zip (>= 2.1.0)
Suggests:
    knitr (>= 1.30.0),
    mCSEA (>= 1.10.0),
    IlluminaHumanMethylation450kanno.ilmn12.hg19,
    IlluminaHumanMethylation450kmanifest,
    IlluminaHumanMethylationEPICanno.ilm10b4.hg19,
    IlluminaHumanMethylationEPICmanifest,
    testthat,
    minfiData,
    BiocStyle
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/omorante/shiny_epico
BugReports: https://github.com/omorante/shiny_epico/issues 
VignetteBuilder: knitr
biocViews: DifferentialMethylation,DNAMethylation,Microarray,Preprocessing,QualityControl