title: "sevenbridges-r"

template:
  params:
    ganalytics: UA-87185344-1

reference:
  - title: "API Client"
    desc: >
      API client.
    contents:
      - get_token
      - api
      - response
  - title: "Authentication"
    desc: >
      Authentication.
    contents:
      - Auth-class
      - sbg_get_env
      - sbg_set_env
  - title: "Project"
    desc: >
      Managing projects.
    contents:
      - project_details
      - project_members
  - title: "Files/Folders"
    desc: >
      File and folder operations.
    contents:
      - FileList
      - FilesList
      - download
      - delete
      - upload_complete_all
      - upload_complete_part
      - upload_delete
      - upload_info_part
      - upload_info
      - upload_init
      - set_tag
      - add_tag
  - title: "Tasks"
    desc: >
      Managing tasks.
    contents:
      - batch
      - setTaskHook
      - getTaskHook
  - title: "File Systems"
    desc: >
      File systems class.
    contents:
      - FS-class
  - title: "CLI Uploader"
    desc: >
      Upload files with command line uploader.
    contents:
      - get_uploader
      - cli_list_projects
      - cli_list_tags
      - cli_upload
      - misc_upload_cli
  - title: "Common Workflow Language"
    desc: >
      Creating CWL tools and workflows in R.
    contents:
      - App-class
      - convert_app
      - input_matrix
      - output_matrix
      - Tool-class
      - test_tool_rabix
      - test_tool_cwlrun
      - test_tool_bunny
      - link
      - link_what
      - SBGWorkflow-class
      - WorkflowStepInputList
      - WorkflowOutputParameterList
      - CWL-class
      - get_cwl_class
      - Process-class
      - ProcessRequirement-class
      - Parameter-class
      - CommandInputParameter-class
      - CommandInputSchema-class
      - CommandLineBinding-class
      - CommandLineTool-class
      - CommandOutputBinding-class
      - CommandOutputParameter-class
      - CommandOutputSchema-class
      - Expression-class
      - ExpressionTool-class
      - Handler-class
      - docker
      - DSCList
      - CCBList
      - CLB
      - SchemaList
      - PrimitiveSingleEnum-class
      - Binding-class
  - title: "Utilities"
    desc: >
      Utility functions.
    contents:
      - sevenbridges-package
      - Item-class
      - misc_make_metadata
      - addIdNum
      - asList
      - set_test_env
      - setListClass