Name Mode Size
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GEO.R 100644 2 kb
QC.R 100644 24 kb
SigDFMethods.R 100644 6 kb
age.R 100644 4 kb
background.R 100644 7 kb
cell_composition.R 100644 9 kb
channel_inference.R 100644 2 kb
cnv.R 100644 15 kb
deidentify.R 100644 4 kb
detection.R 100644 6 kb
dm.R 100644 18 kb
dye_bias.R 100644 7 kb
ethnicity.R 100644 1 kb
feature_selection.R 100644 2 kb
fileSet.R 100644 7 kb
impute.R 100644 4 kb
mLiftOver.R 100644 9 kb
mask.R 100644 10 kb
match_design.R 100644 5 kb
open.R 100644 5 kb
palgen.R 100644 1 kb
readIDAT.R 100644 10 kb
sesame.R 100644 20 kb
sesameAnno.R 100644 9 kb
sex.R 100644 8 kb
species.R 100644 6 kb
strain.R 100644 5 kb
tissue.R 100644 6 kb
track.R 100644 2 kb
utils.R 100644 2 kb
vcf.R 100644 3 kb
visualize.R 100644 7 kb
visualizeHelper.R 100644 7 kb
zzz.R 100644 0 kb
README.md
# SeSAMe - SEnsible Step-wise Analysis of Methylation data [![last commit](https://img.shields.io/github/last-commit/zwdzwd/sesame.svg?style=flat-square)](https://github.com/zwdzwd/sesame/commits/master) SeSAMe is an R package for processing Infinium DNA methylation data. SeSAMe currently supports EPIC, HM450 and HM27 platforms and dynamically generated manifest. To install from Github, ```R BiocManager::install("zwdzwd/sesame") ``` See the package [Home Page on Bioconductor](https://bioconductor.org/packages/release/bioc/html/sesame.html) and the [Developmental Branch](https://bioconductor.org/packages/devel/bioc/html/sesame.html). It also has a depended [data package](https://github.com/zwdzwd/sesameData) for annotation and example data. ## Bugs Bug reports are appreciated. Register issues at the SeSAMe [issue tracker](http://github.com/zwdzwd/sesame/issues). ## About Please cite and reference [SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions](https://doi.org/10.1093/nar/gky691) for more details.