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  • 116b2b9 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:31 -0400;
  • d15d8fa (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:05:31 -0400;
  • 4a74e44 Remove unused files. by Daniel C. Jones <djones3@fredhutch.org> 2022-10-03 09:38:20 -0700;
  • 882be9e Compatibility with Rhtslib 1.99.1 by Daniel C. Jones <djones3@fredhutch.org> 2022-10-03 09:36:34 -0700;
  • b471f9a bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:06:44 +0000;
  • 59a8fc9 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:06:44 +0000;
  • b3b6bc6 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:57:52 +0000;
  • e8ef6fa (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:57:52 +0000;
  • b5c22b2 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:47:09 +0000;
  • c9d8e78 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:47:09 +0000;
  • f9b6f07 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:39:54 -0400;
  • b5490ca (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:39:54 -0400;
  • ddd3af8 Call Rscript instead of R in Makevars by Hervé Pagès <hpages@fredhutch.org> 2020-07-14 13:41:22 -0700;
  • abd9738 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:24:05 +0000;
  • 2b49d14 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:24:04 +0000;
  • e80a73b bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:22 -0400;
  • 9d5b1f7 (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:18 -0400;
  • 881ab3e Adjust Makevars to work with latest Rhtslib by Hervé Pagès <hpages@fredhutch.org> 2019-10-12 13:57:09 -0700;
  • f0cc475 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:01 -0400;
  • edc384f (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:21 -0400;
  • 30d6f83 Update for Rhtslib compatibility. (Patch by Hervé Pagès) by Daniel C. Jones <dcjones@cs.washington.edu> 2019-03-22 13:05:41 -0700;
  • 2d01265 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:29 -0400;
  • 498bb37 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:47 -0400;
  • 9703824 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 71ea389 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:16 -0400;
  • b0502e5 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:11 -0400;
  • 15c3c25 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:32 -0400;
  • 0fdf7e7 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 26fb61d (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 0c35c25 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 67b8cac bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • c8f9b9c (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • fb81db2 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • b9ac733 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 8bd9e82 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 51526cc Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • f2ac64a Fix compilation errors due to R header changes. by Daniel Jones <dcjones@cs.washington.edu> 2016-03-15 01:54:57 +0000;
  • 98487b5 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 2ad0e4a (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • c1ec952 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 0262485 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 6834301 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 7ded197 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • c011178 add r_arch consideration for Linux by Nathaniel Hayden <nhayden@fhcrc.org> 2015-03-20 18:42:12 +0000;
  • a93b2a0 initialize pseudocount member outside of class def by Nathaniel Hayden <nhayden@fhcrc.org> 2015-03-04 01:16:09 +0000;
  • 6511256 update to require proper Rsamtools version by Nathaniel Hayden <nhayden@fhcrc.org> 2015-02-27 20:02:54 +0000;
  • 32d20a6 update to reflect new Rsamtools recommendations by Nathaniel Hayden <nhayden@fhcrc.org> 2015-02-27 01:47:48 +0000;
  • ea983ab Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • a9f6e28 (origin/RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • b750aaf Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 0b7a015 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • fdba294 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 58bb009 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • 00d798d Modify biocViews to remove duplicate biocViews by Sonali Arora <sarora@fhcrc.org> 2014-03-05 00:11:04 +0000;
  • 52f122e modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • f8f3b4b rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 20:16:41 +0000;
  • d0f5dc3 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 4415f20 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • e467555 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • eba47fa Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 2c1bc1d (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • 671ee49 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • a893803 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • 4d9ee3f (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 4e0daeb Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • ca643a6 Add CITATION. by Daniel Jones <dcjones@cs.washington.edu> 2012-09-26 01:59:20 +0000;
  • 26640b4 bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 4c06b15 (origin/RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • 301bfce first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • 15b43f6 Added Rsamtools and ggplot2 to Suggests by Valerie Obenchain <vobencha@fhcrc.org> 2012-03-08 21:13:37 +0000;
  • baae205 version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
  • 66e276a (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
  • 016c127 bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
  • 30e3451 fix a check warning and a windows build error by Daniel Jones <dcjones@cs.washington.edu> 2011-10-13 18:02:34 +0000;
  • 9120a04 some small api improvements and cross-platform fixes by Daniel Jones <dcjones@cs.washington.edu> 2011-10-11 21:38:58 +0000;
  • 71362a2 fix compilation errors on windows by Daniel Jones <dcjones@cs.washington.edu> 2011-08-19 21:06:52 +0000;
  • de9a930 fix a minor compile error by Daniel Jones <dcjones@cs.washington.edu> 2011-08-09 17:27:42 +0000;
  • 09ce8bf fix a minor compile error by Daniel Jones <dcjones@cs.washington.edu> 2011-08-07 21:39:54 +0000;
  • 23b1bf8 A complete refactor/rewrite of the original seqbias code. This should behave more or less identically, but is much more coherent. by Daniel Jones <dcjones@cs.washington.edu> 2011-08-04 07:36:48 +0000;
  • aee21de Bumped version numbers again for new BioC 2.9 devel cycle. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:36:43 +0000;
  • 1167c2f (origin/RELEASE_2_8, RELEASE_2_8) Creating branch for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:32:21 +0000;
  • 38415b0 Bumped version numbers for BioC 2.8 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-04-13 22:27:35 +0000;
  • a864aa8 fix a random crash, a 64bit compile error, objects not getting properly cleaned, etc by Daniel Jones <dcjones@cs.washington.edu> 2011-04-06 20:08:03 +0000;
  • 7d2e61d missing include by Daniel Jones <dcjones@cs.washington.edu> 2011-03-29 20:06:53 +0000;
  • 989bb0a fix a randomly occuring crash by Daniel Jones <dcjones@cs.washington.edu> 2011-03-28 21:08:28 +0000;
  • 621df06 remove an empty directory by Daniel Jones <dcjones@cs.washington.edu> 2011-03-25 05:36:54 +0000;
  • 93f8876 updated to build against Rsamtools 1.3.29 by Daniel Jones <dcjones@cs.washington.edu> 2011-03-25 05:34:07 +0000;
  • 0bd9720 merged a number of improvements by Daniel Jones <dcjones@cs.washington.edu> 2011-03-23 19:03:43 +0000;
  • ff7270e remove repackaged samtools, link to Rsamtools by Daniel Jones <dcjones@cs.washington.edu> 2011-03-23 07:12:04 +0000;
  • cdd8b47 fix mingw compilation error by Daniel Jones <dcjones@cs.washington.edu> 2011-02-18 20:32:21 +0000;
  • bfa9f72 fix mingw compile errors by Daniel Jones <dcjones@cs.washington.edu> 2011-02-12 03:53:41 +0000;
  • 24e9f1d portability fixes by Daniel Jones <dcjones@cs.washington.edu> 2011-02-06 02:53:32 +0000;
  • 0e7f1a0 fixes for several compiler warnings and errors by Daniel Jones <dcjones@cs.washington.edu> 2011-02-02 20:08:21 +0000;
  • 86d3872 corrections for non-gnu platforms by Daniel Jones <dcjones@cs.washington.edu> 2011-01-30 06:54:19 +0000;
  • 576e3e3 Removed non-portable code. Minor algorithmic improvements. by Daniel Jones <dcjones@cs.washington.edu> 2011-01-30 05:41:26 +0000;
  • d958d35 Added the seqbias package to the repository. by Chao-Jen Wong <cwon2@fhcrc.org> 2011-01-22 00:26:36 +0000;