@@ -10,11 +10,11 @@ generated by GNU Autoconf 2.67.  Invocation command line was

 ## Platform. ##

 ## --------- ##

-hostname = dtp2

+hostname = datahorse

 uname -m = i686

-uname -r = 2.6.35-25-generic-pae

+uname -r = 2.6.28-15-generic

 uname -s = Linux

-uname -v = #44-Ubuntu SMP Fri Jan 21 19:01:46 UTC 2011

+uname -v = #49-Ubuntu SMP Tue Aug 18 18:40:08 UTC 2009

 /usr/bin/uname -p = unknown

 /bin/uname -X     = unknown

@@ -28,9 +28,17 @@ uname -v = #44-Ubuntu SMP Fri Jan 21 19:01:46 UTC 2011

 /bin/universe          = unknown

 PATH: /home/dcjones/bin

-PATH: /home/dcjones/bin/i686

+PATH: /opt/local/sbin

+PATH: /opt/local/bin

+PATH: /usr/local/mysql/bin

+PATH: /usr/local/tomcat/bin

+PATH: /usr/local/ant/bin

+PATH: /usr/local/groovy/bin

+PATH: /usr/local/grails/bin

+PATH: /usr/local/tomcat/bin

+PATH: .

+PATH: /usr/local/scala/bin

 PATH: /home/dcjones/src/kent/built/bin/i386

-PATH: /home/dcjones/.cabal/bin

 PATH: /usr/local/sbin

 PATH: /usr/local/bin

 PATH: /usr/sbin

@@ -49,18 +57,18 @@ configure:2170: found /usr/bin/gcc

 configure:2181: result: gcc

 configure:2410: checking for C compiler version

 configure:2419: gcc --version >&5

-gcc (Ubuntu/Linaro 4.4.4-14ubuntu5) 4.4.5

-Copyright (C) 2010 Free Software Foundation, Inc.

+gcc (Ubuntu 4.3.3-5ubuntu4) 4.3.3

+Copyright (C) 2008 Free Software Foundation, Inc.

 This is free software; see the source for copying conditions.  There is NO

 warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

 configure:2430: $? = 0

 configure:2419: gcc -v >&5

 Using built-in specs.

-Target: i686-linux-gnu

-Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.4.4-14ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-multiarch --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu

+Target: i486-linux-gnu

+Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.3.3-5ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-4.3/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --enable-shared --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --enable-nls --with-gxx-include-dir=/usr/include/c++/4.3 --program-suffix=-4.3 --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --enable-mpfr --enable-targets=all --with-tune=generic --enable-checking=release --build=i486-linux-gnu --host=i486-linux-gnu --target=i486-linux-gnu

 Thread model: posix

-gcc version 4.4.5 (Ubuntu/Linaro 4.4.4-14ubuntu5) 

+gcc version 4.3.3 (Ubuntu 4.3.3-5ubuntu4) 

 configure:2430: $? = 0

 configure:2419: gcc -V >&5

 gcc: '-V' option must have argument

@@ -118,7 +126,7 @@ configure:2948: result: yes

 configure:2948: checking for pow

 configure:2948: gcc -o conftest -g -O2   conftest.c -lz  >&5

 conftest.c:35: warning: conflicting types for built-in function 'pow'

-/tmp/ccEJjBMZ.o: In function `main':

+/tmp/ccEcPBa3.o: In function `main':

 /home/dcjones/bio/seqbias/conftest.c:46: undefined reference to `pow'

 collect2: ld returned 1 exit status

 configure:2948: $? = 1

@@ -176,7 +184,7 @@ configure:2948: result: no

 configure:2948: checking for sqrt

 configure:2948: gcc -o conftest -g -O2   conftest.c -lz  >&5

 conftest.c:35: warning: conflicting types for built-in function 'sqrt'

-/tmp/ccxSUiW2.o: In function `main':

+/tmp/ccMe3Krm.o: In function `main':

 /home/dcjones/bio/seqbias/conftest.c:46: undefined reference to `sqrt'

 collect2: ld returned 1 exit status

 configure:2948: $? = 1

@@ -254,8 +262,7 @@ configure:2962: checking how to run the C preprocessor

 configure:2993: gcc -E  conftest.c

 configure:2993: $? = 0

 configure:3007: gcc -E  conftest.c

-conftest.c:16: fatal error: ac_nonexistent.h: No such file or directory

-compilation terminated.

+conftest.c:16:28: error: ac_nonexistent.h: No such file or directory

 configure:3007: $? = 1

 configure: failed program was:

 | /* confdefs.h */

@@ -278,8 +285,7 @@ configure:3032: result: gcc -E

 configure:3052: gcc -E  conftest.c

 configure:3052: $? = 0

 configure:3066: gcc -E  conftest.c

-conftest.c:16: fatal error: ac_nonexistent.h: No such file or directory

-compilation terminated.

+conftest.c:16:28: error: ac_nonexistent.h: No such file or directory

 configure:3066: $? = 1

 configure: failed program was:

 | /* confdefs.h */

@@ -777,7 +783,7 @@ generated by GNU Autoconf 2.67.  Invocation command line was

   CONFIG_COMMANDS = 

   $ ./config.status 

-on dtp2

+on datahorse

 config.status:734: creating src/Makevars

@@ -256,7 +256,7 @@ typedef struct {

 		int i, j;														\

 		for (i = n; i > 1; --i) {										\

 			type_t tmp;													\

-			j = (int)(drand48() * i);									\

+			j = (int)((float)rand() / (float)RAND_MAX * i);									\

 			tmp = a[j]; a[j] = a[i-1]; a[i-1] = tmp;					\

 		}																\

 	}