Package: seqbias Version: 1.15.3 Date: 25-12-2010 Title: Estimation of per-position bias in high-throughput sequencing data Description: This package implements a model of per-position sequencing bias in high-throughput sequencing data using a simple Bayesian network, the structure and parameters of which are trained on a set of aligned reads and a reference genome sequence. Author: Daniel Jones <dcjones@cs.washington.edu> Maintainer: Daniel Jones <dcjones@cs.washington.edu> Depends: R (>= 2.13.0), GenomicRanges (>= 0.1.0), Biostrings (>= 2.15.0), methods LinkingTo: Rsamtools (>= 1.19.38) Imports: zlibbioc Suggests: Rsamtools, ggplot2 LazyLoad: yes License: LGPL-3 biocViews: Sequencing