NAMESPACE
e46f15e6
 #exportPattern("^[[:alpha:]]+")
 useDynLib(seqTools)
 import(methods)
 import(zlibbioc)
 importFrom(utils,head)
 importFrom(utils,tail)
 export(
     ascii2char,
     countDnaKmers,
     countFastaKmers,
     countGenomeKmers,
     countSpliceKmers,
     char2ascii,
     kMerIndex,
     phredTable,
     fastqq,
     fastqKmerLocs,
     fastqKmerSubsetLocs,
     phredDist,
     plotPhredDist,
     plotPhredQuant,
     phredQuantiles,
     revCountDnaKmers,
     simFastqqRunTimes,
     sim_fq,
     trimFastq,
     writeFai,
     writeSimFastq,
     writeSimContFastq
 )
 exportMethods(
     cbDistMatrix,
     collectTime,
     collectDur,
     gcContent,
     gcContentMatrix,
     fileNames,
     getK,
     kmerCount,
     maxSeqLen,
     meltDownK,
     mergedPhred,
     mergedPhredQuantiles,
     mergeFastqq,
     nFiles,
     nNnucs,
     nReads,
     nucFreq,
     phred,
     plotGCcontent,
     plotKmerCount,
     plotMergedPhredQuant,
     plotNucCount,
     plotNucFreq,
     probeLabel,
     "probeLabel<-",
     propPhred,
     seqLen,
     seqLenCount
 )
 exportClasses(
     Fastqq
 )