1. segmentSeq
  2. Graph
Graph of segmentSeq
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  • 7aace85 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:50:22 -0400;
  • 1196b04 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 09:50:22 -0400;
  • b7dc0c6 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:04:54 -0400;
  • 4376804 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:04:54 -0400;
  • 5751cb5 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:04:22 +0000;
  • 1f7dab1 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:04:22 +0000;
  • df9f814 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:53:34 -0500;
  • 8d37aa7 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:55:34 +0000;
  • bc3e0b2 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:55:34 +0000;
  • 056c7a5 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:44:54 +0000;
  • 5fe3637 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:44:54 +0000;
  • 8b61515 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:37:39 -0400;
  • 1c3ee51 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:37:38 -0400;
  • 413d326 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:21:25 +0000;
  • 4bb4854 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:21:25 +0000;
  • 353e1d8 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:15 -0400;
  • 1012f7a (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:13 -0400;
  • 2c5c386 Use is(x, "DataFrame") instead of class(x) == "DataFrame" by Hervé Pagès <hpages@fredhutch.org> 2019-08-16 19:08:54 -0700;
  • 6967e75 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:56 -0400;
  • a799d33 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:13 -0400;
  • b979fd8 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:28 -0400;
  • 41e5cbb (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:46 -0400;
  • 759d1f8 Merge branch 'master' of git.bioconductor.org:packages/segmentSeq by t.hardcastle <tjh48@cam.ac.uk> 2018-07-04 11:35:23 +0100;
  • 96aa1e9 Added coverage filter to segmentation by t.hardcastle <tjh48@cam.ac.uk> 2018-07-04 11:30:37 +0100;
  • fb29f69 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:37 -0400;
  • 7fee5bf (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:13 -0400;
  • 068b3c8 change to lociLikelihoods allowing subset to be defined as a list corresponding to replicate structure by t.hardcastle <tjh48@cam.ac.uk> 2018-04-17 20:21:41 +0100;
  • 85e1fab bump testing commit process by t.hardcastle <tjh48@cam.ac.uk> 2018-04-17 15:30:44 +0100;
  • 754b389 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:10 -0400;
  • 70d377b (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:28 -0400;
  • 7ec6dac Add getOverlaps as user-exposed function by t.hardcastle <tjh48@cam.ac.uk> 2017-10-26 01:17:45 +0100;
  • e4c1a7a Modification on git from copied files by t.hardcastle <tjh48@cam.ac.uk> 2017-10-12 12:58:11 +0100;
  • 9438798 Modification on git from copied files by t.hardcastle <tjh48@cam.ac.uk> 2017-10-12 12:57:52 +0100;
  • a4d2763 Modification on git from copied files by t.hardcastle <tjh48@cam.ac.uk> 2017-10-12 12:57:02 +0100;
  • 11dfbb3 Modification on git from copied files by t.hardcastle <tjh48@cam.ac.uk> 2017-10-12 12:54:13 +0100;
  • ed95201 un-deprecate segmentSeq by Valerie Obenchain <vobencha@fhcrc.org> 2017-05-04 18:27:02 +0000;
  • 83df9ce deprecate segmentSeq by Valerie Obenchain <vobencha@fhcrc.org> 2017-04-24 23:29:07 +0000;
  • 3fb4f61 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • d645674 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 04e0d80 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 92d686a 2.9.11 fix to timeout in check. by Tom Hardcastle <tjh48@cam.ac.uk> 2017-04-24 11:31:32 +0000;
  • e79e9ab v2.9.10 - shorter vignette runs to clear timeouts by Tom Hardcastle <tjh48@cam.ac.uk> 2017-04-22 16:43:08 +0000;
  • b285805 2.9.9 fix for lociLikelihoods so that it works for the no replicate case. by Tom Hardcastle <tjh48@cam.ac.uk> 2017-03-21 11:41:37 +0000;
  • 940cf9a 2.9.8 replace getOverlaps with findOverlaps. by Tom Hardcastle <tjh48@cam.ac.uk> 2017-03-20 17:18:08 +0000;
  • 5c867a4 2.9.6 remove requirement for chromosomes in processTags by Tom Hardcastle <tjh48@cam.ac.uk> 2017-02-09 11:23:00 +0000;
  • 6a33c15 2.9.5 added givenExpression fuction; tweaked default parameters. by Tom Hardcastle <tjh48@cam.ac.uk> 2017-01-30 10:54:30 +0000;
  • 0fe2638 2.9.5 minor bugfixing by Tom Hardcastle <tjh48@cam.ac.uk> 2017-01-20 21:43:44 +0000;
  • a93e029 2.9.2 abstol in threshold estimation, dropped inner split in partheuristicSeg by Tom Hardcastle <tjh48@cam.ac.uk> 2016-12-13 10:31:36 +0000;
  • 9c5e7e1 1.9.1 thresholding methylation overhaul. by Tom Hardcastle <tjh48@cam.ac.uk> 2016-12-08 12:31:12 +0000;
  • ea0e98d bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 974199c (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 0a8da8c bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 7519a19 2.7.4 overhaul for large sets by Tom Hardcastle <tjh48@cam.ac.uk> 2016-09-23 23:59:45 +0000;
  • 25b85ad bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 858334a (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • e045783 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 2ae5691 2.5.6 fix to validation functions of alignmentData and alignmentMeth classes by Tom Hardcastle <tjh48@cam.ac.uk> 2016-04-06 11:40:27 +0000;
  • b07fefa use accessors instead of direct slot access on Hits objects by Herve Pages <hpages@fhcrc.org> 2016-02-22 10:30:52 +0000;
  • ff3ada1 2.5.3 fix to lociLikelihoods to work off null data by Tom Hardcastle <tjh48@cam.ac.uk> 2016-02-08 15:57:18 +0000;
  • 2f90ba6 2.5.2 fix to lociLikelihoods when using an object with existing posteriors by Tom Hardcastle <tjh48@cam.ac.uk> 2016-01-27 11:26:39 +0000;
  • fdc4019 2.5.1 bugfixes by Tom Hardcastle <tjh48@cam.ac.uk> 2015-11-17 23:51:22 +0000;
  • daa48c3 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 5e1b621 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 766d492 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 255d3a3 (origin/RELEASE_3_1, RELEASE_3_1) v.2.2.2 bugfix to getCounts function miscounting multireads by Tom Hardcastle <tjh48@cam.ac.uk> 2015-08-04 14:11:41 +0000;
  • 6139ea0 v2.3.2 bugfix to getCounts on multireads by Tom Hardcastle <tjh48@cam.ac.uk> 2015-08-04 10:46:22 +0000;
  • 246ebe0 Automated update by Tom Hardcastle <tjh48@cam.ac.uk> 2015-04-22 23:22:36 +0000;
  • a5591c9 2.3.1. bugfix on matches / multireads divergence in variable names by Tom Hardcastle <tjh48@cam.ac.uk> 2015-04-22 14:01:19 +0000;
  • 3e4a5f0 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • d10e78b Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 4f3e486 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 0df7cdc 2.1.8. fix to non-recoverable error in plotAverageProfile by Tom Hardcastle <tjh48@cam.ac.uk> 2015-04-13 08:18:04 +0000;
  • df8a8ad 2.1.7 updates to vignettes by Tom Hardcastle <tjh48@cam.ac.uk> 2015-04-06 20:15:45 +0000;
  • 8c44246 v2.1.5 change to clusterExport methods instead of handrolled clustAssigns. by Tom Hardcastle <tjh48@cam.ac.uk> 2015-03-16 10:43:58 +0000;
  • 911799a v.2.1.3 bugfixing on interaction with new baySeq weightings by Tom Hardcastle <tjh48@cam.ac.uk> 2015-01-30 12:44:13 +0000;
  • 95c75ab (origin/RELEASE_3_0) one more cleanup by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-11-07 21:48:56 +0000;
  • edb8f4d Be a good citizen in both vignettes, stopping started clusters, and don't use more cores than we may have. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-11-07 21:48:15 +0000;
  • 3f505e2 Be a good citizen in both vignettes, stopping started clusters, and don't use more cores than we may have. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-11-07 21:45:50 +0000;
  • 0d12c69 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 9a001b9 Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • ada23a1 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 06ffccc fix missing bracket6 by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-12 23:29:58 +0000;
  • 2a57634 1.99.3 fix to manpage to remove warning on IRanges::DataFrame, which no longer exists. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-10-12 23:12:35 +0000;
  • 9ef6644 1.99.2 added s4vectors to imports; fixes build problems by Tom Hardcastle <tjh48@cam.ac.uk> 2014-10-12 23:04:13 +0000;
  • 41433c9 1.99.1 changed version requirements for baySeq. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-10-10 10:17:29 +0000;
  • 287fa72 correct version number by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-09 23:16:43 +0000;
  • bebf39c v.2.0.3 Upgrade to version 2 of baySeq. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-10-07 19:02:35 +0000;
  • 965322d 1.17.3 fix warning in getCounts.Rd file by Tom Hardcastle <tjh48@cam.ac.uk> 2014-10-02 08:59:22 +0000;
  • 0e00b8e need to import S4Vectors by Herve Pages <hpages@fhcrc.org> 2014-07-23 17:54:40 +0000;
  • 371ad88 v.1.17.2 various minor bugfixing and functional improvements by Tom Hardcastle <tjh48@cam.ac.uk> 2014-07-02 15:13:42 +0000;
  • 57b7ad1 biocViews update by Sonali Arora <sarora@fhcrc.org> 2014-06-10 21:52:12 +0000;
  • 3e7871e Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 4a81dde (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 832074e First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • c96b920 v.1.15.21 previous fix fails, this one works. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-04-07 13:23:41 +0000;
  • 32e82b4 v.1.15.21 previous fix fails, this one works. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-04-07 13:23:17 +0000;
  • 8094eb0 v.1.15.20 caught exception for zero potential nulls. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-04-05 01:04:42 +0000;
  • 7de3d49 v.1.15.19 - much improved memory handling, added selection by likelihood/FDR/FWER by Tom Hardcastle <tjh48@cam.ac.uk> 2014-04-01 15:49:51 +0000;
  • 9e2af09 Explicitly stop cluster in vignette. This should clear up build problem on windows. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-03-26 19:08:35 +0000;
  • 8d9911d v.1.15.15; better memory control, quantile profile plotting. by Tom Hardcastle <tjh48@cam.ac.uk> 2014-03-20 14:17:45 +0000;