import("methods")
import("IRanges")
import("GenomicRanges")
import("baySeq")
import("ShortRead")
import("S4Vectors")
import("parallel")
importFrom("Rsamtools", "scanBam", "ScanBamParam")
importFrom("GenomeInfoDb", "seqlevels", "Seqinfo", "seqlengths", "seqlengths<-", "seqlevels<-")
importFrom("graphics", "axis", "plot", "rect", "segments", "text")
importFrom("grDevices", "rgb")
importFrom("abind", "abind")
importFrom("utils", "data", "read.delim")
importFrom("grDevices", "dev.cur", "rainbow")
importFrom("graphics", "abline", "lines", "par", "title")
importFrom("stats", "dbeta", "dbinom", "density", "dnbinom",
           "optimise", "pbeta", "rbeta", "rbinom", "runif",
           "weighted.mean")
importFrom("utils", "read.table", "write.table")
exportClasses("alignmentData")
#exportClasses("segData")
exportMethods("dim", "[", "show")
exportPattern("^[^\\.]")