# Generated by roxygen2: do not edit by hand

export(CLR_FN)
export(DESEQ_FN)
export(FQT_FN)
export(FQ_FN)
export(SCRAN_FN)
export(SUM_FN)
export(SconeExperiment)
export(TMM_FN)
export(UQ_FN)
export(biplot_color)
export(biplot_interactive)
export(estimate_ziber)
export(factor_sample_filter)
export(fast_estimate_ziber)
export(impute_expectation)
export(impute_null)
export(lm_adjust)
export(make_design)
export(metric_sample_filter)
export(sconeReport)
export(scone_easybake)
export(score_matrix)
export(simple_FNR_params)
exportClasses(SconeExperiment)
exportMethods(SconeExperiment)
exportMethods(get_batch)
exportMethods(get_bio)
exportMethods(get_design)
exportMethods(get_negconeval)
exportMethods(get_negconruv)
exportMethods(get_normalized)
exportMethods(get_params)
exportMethods(get_poscon)
exportMethods(get_qc)
exportMethods(get_score_ranks)
exportMethods(get_scores)
exportMethods(scone)
exportMethods(select_methods)
import(BiocParallel)
import(SummarizedExperiment)
import(gplots)
import(methods)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(RColorBrewer,brewer.pal)
importFrom(RUVSeq,RUVg)
importFrom(aroma.light,normalizeQuantileRank.matrix)
importFrom(boot,inv.logit)
importFrom(boot,logit)
importFrom(class,knn)
importFrom(cluster,silhouette)
importFrom(compositions,clr)
importFrom(diptest,dip.test)
importFrom(edgeR,calcNormFactors)
importFrom(fpc,pamk)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,abline)
importFrom(graphics,arrows)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(hexbin,hexbin)
importFrom(hexbin,plot)
importFrom(limma,lmFit)
importFrom(matrixStats,colIQRs)
importFrom(matrixStats,colMedians)
importFrom(matrixStats,rowMedians)
importFrom(mixtools,normalmixEM)
importFrom(rARPACK,svds)
importFrom(rhdf5,H5close)
importFrom(rhdf5,h5createFile)
importFrom(rhdf5,h5ls)
importFrom(rhdf5,h5read)
importFrom(rhdf5,h5write)
importFrom(rhdf5,h5write.default)
importFrom(stats,approx)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coefficients)
importFrom(stats,contr.sum)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,dnbinom)
importFrom(stats,fitted.values)
importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pnorm)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,quasibinomial)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(utils,capture.output)
importFrom(utils,head)
importFrom(utils,sessionInfo)
importFrom(utils,write.csv)
importFrom(utils,write.table)