Package: scTensor
Type: Package
Title: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Version: 2.13.0
Authors@R: c(person("Koki", "Tsuyuzaki", role = c("aut", "cre"),
                email = "k.t.the-answer@hotmail.co.jp"),
            person("Kozo", "Nishida", role = "aut",
                email = "kozo.nishida@gmail.com"))
Depends: R (>= 4.1.0)
Imports: methods,
    RSQLite,
    igraph,
    S4Vectors,
    plotly,
    reactome.db,
    AnnotationDbi,
    SummarizedExperiment,
    SingleCellExperiment,
    nnTensor (>= 1.1.5),
    ccTensor (>= 1.0.2),
    rTensor (>= 1.4.8),
    abind,
    plotrix,
    heatmaply,
    tagcloud,
    rmarkdown,
    BiocStyle,
    knitr,
    AnnotationHub,
    MeSHDbi (>= 1.29.2),
    grDevices,
    graphics,
    stats,
    utils,
    outliers,
    Category,
    meshr (>= 1.99.1),
    GOstats,
    ReactomePA,
    DOSE,
    crayon,
    checkmate,
    BiocManager,
    visNetwork,
    schex,
    ggplot2
Suggests: testthat,
    LRBaseDbi,
    Seurat,
    scTGIF,
    Homo.sapiens
Description: The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.
License: Artistic-2.0
biocViews: DimensionReduction,
    SingleCell,
    Software,
    GeneExpression
VignetteBuilder: knitr