Package: scRecover
Type: Package
Title: scRecover for imputation of single-cell RNA-seq data
Version: 1.19.0
Date: 2019-04-28
Author: Zhun Miao, Xuegong Zhang <zhangxg@tsinghua.edu.cn>
Maintainer: Zhun Miao <miaoz13@tsinghua.org.cn>
Description: scRecover is an R package for imputation of single-cell RNA-seq (scRNA-seq) data.
    It will detect and impute dropout values in a scRNA-seq raw read counts matrix while 
    keeping the real zeros unchanged, since there are both dropout zeros and real zeros in 
    scRNA-seq data. By combination with scImpute, SAVER and MAGIC, scRecover not only detects 
    dropout and real zeros at higher accuracy, but also improve the downstream clustering and 
    visualization results.
License: GPL
Encoding: UTF-8
Depends: R (>= 3.4.0)
Imports:
    stats,
    utils,
    methods,
    graphics,
    doParallel,
    foreach,
    parallel,
    penalized,
    kernlab,
    rsvd,
    Matrix (>= 1.2-14),
    MASS (>= 7.3-45),
    pscl (>= 1.4.9),
    bbmle (>= 1.0.18),
    gamlss (>= 4.4-0),
    preseqR (>= 4.0.0),
    SAVER (>= 1.1.1),
    BiocParallel (>= 1.12.0)
Suggests:
    knitr,
    rmarkdown,
    SingleCellExperiment,
    testthat
VignetteBuilder: knitr
URL: https://miaozhun.github.io/scRecover
BugReports: https://github.com/miaozhun/scRecover/issues
biocViews: GeneExpression, SingleCell, RNASeq, Transcriptomics, Sequencing, Preprocessing, Software
RoxygenNote: 6.0.1