225347e (HEAD -> devel, origin/master, origin/devel, origin/HEAD) Version bump by
Shians <registertonysu@gmail.com>2023-10-25 13:41:56 +1100;
460ed4c Merge branch 'devel' of git.bioconductor.org:packages/scPipe by
Shians <registertonysu@gmail.com>2023-10-25 13:41:44 +1100;
4e96a2f Removed all uses of stdlib and stdio by
Shians <registertonysu@gmail.com>2023-10-25 13:33:21 +1100;
7bbae36 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:00:35 -0400;
64848af (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:00:35 -0400;
2021172 Version bump by
Shians <registertonysu@gmail.com>2023-10-23 11:24:24 +1100;
40a8e89 Refactored headers by
Shians <registertonysu@gmail.com>2023-10-23 11:23:52 +1100;
a469731 Merge branch 'master' of github.com:Shians/scPipe by
Shians <registertonysu@gmail.com>2023-10-18 12:05:08 +1100;
56df524 Moved minimal atac example by
Shians <registertonysu@gmail.com>2023-10-18 12:04:56 +1100;
c485894 Fixed usage of strncopy on pointers by
shians <registertonysu@gmail.com>2023-10-11 17:24:42 +1100;
06de042 Removed windows restrictions in vignette by
shians <registertonysu@gmail.com>2023-10-11 16:30:32 +1100;
803e382 Fixed check against character(0) by
shians <registertonysu@gmail.com>2023-10-11 16:30:22 +1100;
122544f Changed memcpy to memmove in case of overlapped address by
shians <registertonysu@gmail.com>2023-10-11 13:21:57 +1100;
785e294 Added tests by
shians <registertonysu@gmail.com>2023-10-11 13:07:46 +1100;
b8a6ee5 Refactored string allocation operations by
shians <registertonysu@gmail.com>2023-10-11 12:13:59 +1100;
8949272 Merge branch 'master' of github.com:OliverVoogd/scPipe by
shians <registertonysu@gmail.com>2023-10-10 14:04:08 +1100;
44d4024 remove FragmentThread tests which cause a C stack usage limit error by
Oliver Voogd <olivervoogd@gmail.com>2023-10-09 14:42:31 +1100;
5d2f9b8 Merge branch 'devel' of git.bioconductor.org:packages/scPipe by
Shians <registertonysu@gmail.com>2023-10-05 15:09:49 +1100;
f1bf2e1 Merge branch 'master' of https://github.com/shaniAmare/scPipe by
Shians <registertonysu@gmail.com>2023-10-05 15:08:35 +1100;
24fa509 Added citation by
Shians <registertonysu@gmail.com>2023-10-05 15:07:32 +1100;
80e3bd0 Recompiled docs by
Shians <registertonysu@gmail.com>2023-10-05 15:07:25 +1100;
8708e49 Added missing namespace by
Shians <registertonysu@gmail.com>2023-10-05 15:04:31 +1100;
77c21c9 Fixed vignette title by
Shians <registertonysu@gmail.com>2023-10-05 15:00:37 +1100;
d2443a7 Merge branch 'LuyiTian:master' into master by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2023-06-12 21:01:39 +1000;
22d23b9 Merge pull request <a href="#39">#39</a> from OliverVoogd/master by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2023-05-19 13:09:01 +1000;
044d8e6 Update trimbarcode.cpp by
OliverVoogd <51314988+OliverVoogd@users.noreply.github.com>2023-05-16 19:52:36 +1000;
76de7bd bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 10:57:21 -0400;
2d9cb4c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 10:57:21 -0400;
d90f451 Merge pull request <a href="#154">#154</a> from OliverVoogd/master by
Luyi Tian <tlytiger@hotmail.com>2023-04-17 21:26:42 +0800;
dcd0512 merge conflict resolution between local and LuyiTian/scPipe by
Oliver Voogd <olivervoogd@gmail.com>2023-04-15 10:23:03 +1000;
308e6f9 resolved sc_atac_create_fragments not generating a fragments.bed file in some cases by
Oliver Voogd <olivervoogd@gmail.com>2023-04-04 16:45:31 +1000;
defa6ff (origin/RELEASE_3_16, RELEASE_3_16) Version bump by
Shians <registertonysu@gmail.com>2023-03-07 11:45:39 +1100;
ed70aa4 Merge branch 'master' into bioc_RELEASE_3_16 by
Shians <registertonysu@gmail.com>2023-03-07 11:45:34 +1100;
6c1ceb5 Version bump by
Shians <registertonysu@gmail.com>2023-03-07 11:02:51 +1100;
a8be8f2 Merge branch 'master' of https://github.com/LuyiTian/scPipe by
Shians <registertonysu@gmail.com>2023-03-07 11:02:14 +1100;
107e944 Merge pull request <a href="#153">#153</a> from OliverVoogd/luyimaster by
Luyi Tian <tlytiger@hotmail.com>2023-03-06 20:37:09 +0800;
0f9166b Update scPipe_atac_tutorial.Rmd by
OliverVoogd <51314988+OliverVoogd@users.noreply.github.com>2023-03-06 12:41:12 +1100;
66bba8a Synchronised C++ code with master branch by
Shians <registertonysu@gmail.com>2023-03-06 09:24:57 +1100;
a430430 resolved windows atac vignette build crashing due to realloc in trim barcode by
Oliver Voogd <51314988+OliverVoogd@users.noreply.github.com>2023-03-03 14:40:09 +1100;
9248010 Version bump by
Shians <registertonysu@gmail.com>2023-02-21 13:25:53 +1100;
0af8fb1 Version bump by
Shians <registertonysu@gmail.com>2023-03-03 16:21:10 +1100;
8c7d457 Merge commit 'refs/pull/153/head' of https://github.com/LuyiTian/scPipe by
Shians <registertonysu@gmail.com>2023-03-03 16:20:07 +1100;
453af2e resolved windows atac vignette build crashing due to realloc in trim barcode by
Oliver Voogd <51314988+OliverVoogd@users.noreply.github.com>2023-03-03 14:40:09 +1100;
327228c Version bump by
Shians <registertonysu@gmail.com>2023-02-21 13:25:53 +1100;
3d80adc Merge pull request <a href="#152">#152</a> from OliverVoogd/luyimaster by
Luyi Tian <tlytiger@hotmail.com>2023-02-11 22:18:09 +0800;
158aa95 updated vignette to build on windows by
Oliver Voogd <51314988+OliverVoogd@users.noreply.github.com>2023-02-10 15:43:31 +1100;
47d16b1 added narrowPeak file for atac vignette by
Oliver Voogd <olivervoogd@gmail.com>2023-02-10 11:57:57 +1100;
06c3d54 Resolved Windows memory issues when building vignette by
Oliver Voogd <51314988+OliverVoogd@users.noreply.github.com>2023-02-09 20:15:04 +1100;
e04bdcf fixed typo for output dir by
Oliver Voogd <olivervoogd@gmail.com>2023-01-26 11:36:49 +1100;
0cb8e1a added vctrs >= 0.5.2 as imports by
Oliver Voogd <olivervoogd@gmail.com>2023-01-26 11:07:49 +1100;
08528b1 resolved missing namespace for seqnames function by
Oliver Voogd <olivervoogd@gmail.com>2023-01-25 12:24:26 +1100;
a9ffcbe Merge pull request <a href="#151">#151</a> from Shians/master by
Luyi Tian <tlytiger@hotmail.com>2023-01-12 17:27:05 +0800;
42bb966 Version bump by
Shians <registertonysu@gmail.com>2023-01-09 15:30:40 +1100;
4c9fd89 Version bump by
Shians <registertonysu@gmail.com>2023-01-09 15:30:05 +1100;
6c305d6 Merge branch 'master' into bioc_RELEASE_3_16 by
Shians <registertonysu@gmail.com>2023-01-09 15:29:51 +1100;
fc863bc Removed countreg from suggests by
Shians <registertonysu@gmail.com>2023-01-09 15:28:28 +1100;
2b45048 removed github actions by
Oliver Voogd <olivervoogd@gmail.com>2023-01-04 14:47:28 +1100;
abb3128 Merge branch 'master' of https://github.com/LuyiTian/scPipe by
Shians <registertonysu@gmail.com>2023-01-04 14:06:09 +1100;
7699a38 Fixed version for next major by
Shians <registertonysu@gmail.com>2023-01-04 14:05:31 +1100;
fcf685c Version fix to odd minor by
Shians <registertonysu@gmail.com>2023-01-04 14:04:34 +1100;
69dfc91 Fixed version number for RELEASE by
Shians <registertonysu@gmail.com>2023-01-04 14:03:05 +1100;
8dcc967 Restoring scATAC functionality by
Shians <registertonysu@gmail.com>2023-01-04 12:48:30 +1100;
5cd3760 Sync version to RELEASE by
Shians <registertonysu@gmail.com>2023-01-03 16:10:34 +1100;
72aa61f Merge branch 'master' of github.com:OliverVoogd/scPipe merge remote changes by
Oliver Voogd <olivervoogd@gmail.com>2023-01-03 16:08:46 +1100;
5e6d5a8 fixed typoe in sc_atac_feature_counting by
Oliver Voogd <olivervoogd@gmail.com>2023-01-03 16:08:11 +1100;
6bd13df Merge branch 'master' into bioc_RELEASE_3_16 by
Shians <registertonysu@gmail.com>2023-01-03 16:02:13 +1100;
e01595d Added BiocCheck folder to gitignore by
Shians <registertonysu@gmail.com>2023-01-03 15:44:48 +1100;
2a055bb Recompiled docs by
Shians <registertonysu@gmail.com>2023-01-03 14:37:51 +1100;
37dcc5d Recompiled docs by
Shians <registertonysu@gmail.com>2023-01-03 14:36:52 +1100;
ec2f4d8 Fully remove `sc_atac_cellranger_cell_calling()` code to prevent documentation conflict by
Shians <registertonysu@gmail.com>2023-01-03 14:36:44 +1100;
f24931c Removed 'countreg' from Suggests to pass check by
OliverVoogd <51314988+OliverVoogd@users.noreply.github.com>2023-01-03 12:48:07 +1100;
24e66d6 Merge branch 'master' of https://github.com/shaniAmare/scPipe by
Shians <registertonysu@gmail.com>2023-01-03 10:58:32 +1100;
ca7f55d removed documentation for sc_atac_cellranger_cell_calling and removed windows testing by
Oliver Voogd <olivervoogd@gmail.com>2022-12-21 15:20:56 +1100;
2b35c37 added github actions for bioccheck by
Oliver Voogd <olivervoogd@gmail.com>2022-12-20 17:52:01 +1100;
afcb57a Remove cell ranger option from cell calling by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2022-12-16 10:28:38 +1100;
a564260 Merge pull request <a href="#38">#38</a> from OliverVoogd/master by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2022-12-16 10:14:18 +1100;
51a0bf1 removed unneccessary @importFrom lines by
Oliver Voogd <olivervoogd@gmail.com>2022-12-15 15:16:48 +1100;
de411f6 cleanup of functional calls for r CMD CHECK by
Oliver Voogd <olivervoogd@gmail.com>2022-12-15 14:56:27 +1100;
a9f9388 Merge branch 'master' of https://github.com/shaniAmare/scPipe by
Shians <registertonysu@gmail.com>2022-12-09 11:15:22 +1100;
5ea9c4d Merge pull request <a href="#37">#37</a> from OliverVoogd/master by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2022-12-07 22:15:02 +1100;
f683178 Updated tests to avoid C stack usage reaching limit by
Oliver Voogd <olivervoogd@gmail.com>2022-12-07 18:14:56 +1100;
3331ad4 minor formatting changes to resolve BiocCheck NOTES and testthat errors by
Oliver Voogd <olivervoogd@gmail.com>2022-12-07 15:38:35 +1100;
b1d577a Merge branch 'shaniAmare:master' into master by
OliverVoogd <51314988+OliverVoogd@users.noreply.github.com>2022-12-01 22:25:39 +1100;
e4c64a9 formatting for removal of BiocCheck NOTES by
Oliver Voogd <olivervoogd@gmail.com>2022-12-01 22:24:27 +1100;
6bf8f0d Merge pull request <a href="#36">#36</a> from OliverVoogd/master by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2022-11-30 20:26:01 +1100;
ff29748 updated R required version and biocViews by
Oliver Voogd <olivervoogd@gmail.com>2022-11-30 19:23:36 +1100;
678573b Merge branch 'shaniAmare:master' into master by
OliverVoogd <51314988+OliverVoogd@users.noreply.github.com>2022-11-30 16:14:26 +1100;
74ae3f4 fixed vignette to use filter option for cell calling, documentation changes to conform to BiocCheck() by
Oliver Voogd <olivervoogd@gmail.com>2022-11-30 16:13:21 +1100;
2c1b2be Merge pull request <a href="#35">#35</a> from OliverVoogd/master by
Shani Amarasinghe <43805905+shaniAmare@users.noreply.github.com>2022-11-29 10:03:31 +1100;
583adff Reverted imports by
Shians <registertonysu@gmail.com>2022-11-23 09:42:31 +1100;
d440fc6 Version bump by
Shians <registertonysu@gmail.com>2022-11-17 11:02:21 +1100;
0ab932c Fixed extra bracket by
Shians <registertonysu@gmail.com>2022-11-10 18:01:55 +1100;
b6e7bbb Revert back to f18ea8df3c83919a6756114839f1d257a0e7ba7a by
Shians <registertonysu@gmail.com>2022-11-10 18:01:26 +1100;
af1ed0b removed non-bioconductor 'countreg' from description by
Oliver Voogd <olivervoogd@gmail.com>2022-11-14 14:42:26 +1100;
9ac62cc resolved Bioconductor documentation warnings by adding \value and some examples by
Oliver Voogd <olivervoogd@gmail.com>2022-11-12 14:24:03 +1100;
38e6579 Revert "Revert back to f18ea8df3c83919a6756114839f1d257a0e7ba7a" by
Shians <registertonysu@gmail.com>2022-11-11 10:48:09 +1100;
51fb1de Version bump by
Shians <registertonysu@gmail.com>2022-11-10 18:03:29 +1100;
c245e68 Merge git.bioconductor.org:packages/scPipe by
Shians <registertonysu@gmail.com>2022-11-10 18:03:16 +1100;
6973e4a Fixed extra bracket by
Shians <registertonysu@gmail.com>2022-11-10 18:01:55 +1100;
87d6c67 Revert back to f18ea8df3c83919a6756114839f1d257a0e7ba7a by
Shians <registertonysu@gmail.com>2022-11-10 18:01:26 +1100;
