Name Mode Size
..
dot-compute_ssFC.Rd 100644 1 kb
generate_permuted_scores.Rd 100644 4 kb
gsAnnotation_df.Rd 100644 1 kb
logCPM_example.Rd 100644 1 kb
metadata_example.Rd 100644 1 kb
normalise_by_permu.Rd 100644 2 kb
pathway_pert.Rd 100644 1 kb
plot_community.Rd 100644 6 kb
plot_gene_contribution.Rd 100644 4 kb
plot_gs2gene.Rd 100644 6 kb
plot_gs_network.Rd 100644 3 kb
rank_gene_pert.Rd 100644 2 kb
raw_gene_pert.Rd 100644 2 kb
retrieve_topology.Rd 100644 3 kb
sSNAPPY.Rd 100644 0 kb
weight_ss_fc.Rd 100644 4 kb
README.md
# sSNAPPY: Single Sample directioNAl Pathway Perturbation analYsis `sSNAPPY` is a package for computing directional pathway perturbation scores from logCPM in RNA-seq data. The final output can be used to test the significance of pathway perturbation at both individual-sample and overall treatment levels. # Installation Instructions To install this package, please use BiocManager. ```r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("sSNAPPY") ```