url: https://wenjun-liu.github.io/sSNAPPY/
template:
  params:
    bootswatch: simplex
authors:
  Wenjun Liu:
    href: https://github.com/Wenjun-Liu
reference:
- title: Functions for deriving single-sample pathway perturbation scores
  contents:
  - weight_ss_fc
  - retrieve_topology
  - raw_gene_pert
  - pathway_pert
  - rank_gene_pert
  - generate_permuted_scores
  - normalise_by_permu
- title: Visualisation Functions
  contents:
  - plot_gs_network
  - plot_gene_contribution
  - plot_community
  - plot_gs2gene
- title: Data Objects
  contents:
  - logCPM_example
  - metadata_example
  - gsAnnotation_df
- title: Package
  contents: sSNAPPY
navbar:
  type: default
  left:
  - text: Get Started
    href: articles/sSNAPPY.html
  - text: Reference
    href: reference/index.html
  - text: News
    href: news/index.html
  right:
  - icon: fa-github fa-lg
    href: https://github.com/Wenjun-Liu/sSNAPPY