Package: sSNAPPY
Title: Single Sample directioNAl Pathway Perturbation analYsis
Version: 1.2.5
Authors@R: 
    person("Wenjun", "Liu", , "wenjun.liu@adelaide.edu.au", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-8185-3069"))
Description: A single sample pathway perturbation testing method for RNA-seq data. The method propagates changes in gene expression
             down gene-set topologies to compute single-sample directional pathway perturbation scores that reflect potential directions
             of changes.Perturbation scores can be used to test significance of pathway perturbation at both individual-sample and 
             treatment levels.  
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
Suggests: 
    BiocManager,
    BiocStyle,
    cowplot,
    DT,
    htmltools,
    knitr,
    pander,
    rmarkdown,
    spelling,
    stringr,
    testthat (>= 3.0.0),
    tidyverse
Config/testthat/edition: 3
SystemRequirements: C++11
LazyData: false
Imports: 
    dplyr,
    magrittr,
    rlang,
    stats,
    purrr,
    BiocParallel,
    graphite,
    Rcpp,
    tibble,
    ggplot2,
    ggraph,
    igraph,
    reshape2,
    org.Hs.eg.db,
    SummarizedExperiment,
    edgeR,
    methods,
    ggforce,
    ggnewscale,
    pheatmap,
    utils
LinkingTo: 
    Rcpp,
    RcppArmadillo
Depends: 
    R (>= 4.2.0)
biocViews:
    Software, GeneExpression, GeneSetEnrichment, GeneSignaling
URL: https://wenjun-liu.github.io/sSNAPPY/
VignetteBuilder: knitr
BugReports: https://github.com/Wenjun-Liu/sSNAPPY/issues
Language: en-US