Package: rtracklayer
Title: R interface to genome annotation files and the UCSC genome browser
Version: 1.48.0
Author: Michael Lawrence, Vince Carey, Robert Gentleman
Depends: R (>= 3.3), methods, GenomicRanges (>= 1.37.2)
Imports: XML (>= 1.98-0), BiocGenerics (>= 0.25.1),
         S4Vectors (>= 0.23.18), IRanges (>= 2.13.13), XVector (>= 0.19.7),
         GenomeInfoDb (>= 1.15.2),
         Biostrings (>= 2.47.6), zlibbioc, RCurl (>= 1.4-2),
         Rsamtools (>= 1.31.2), GenomicAlignments (>= 1.15.6), tools
Suggests: BSgenome (>= 1.33.4), humanStemCell, microRNA (>= 1.1.1), genefilter,
          limma,, hgu133plus2.db, GenomicFeatures,
          BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene,
LinkingTo: S4Vectors, IRanges, XVector
Description: Extensible framework for interacting with multiple genome 
  browsers (currently UCSC built-in) and manipulating 
  annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
  WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
  supported browsers, as well as query and modify the browser state, such as the
  current viewport.
Maintainer: Michael Lawrence <>
License: Artistic-2.0 + file LICENSE
Collate: io.R web.R ranges.R trackDb.R browser.R ucsc.R readGFF.R gff.R bed.R
         wig.R utils.R bigWig.R chain.R quickload.R twobit.R fasta.R tabix.R
         bam.R trackTable.R index.R compression.R test_rtracklayer_package.R
         ncbi.R igv.R zzz.R
biocViews: Annotation,Visualization,DataImport