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.Rbuildignore 100644 0 kb
DESCRIPTION 100644 1 kb
NAMESPACE 100644 1 kb
NEWS 100644 7 kb
README.md 100644 2 kb
README.md
> The onology lookup service, the backend behind rols has been > [updated](http://www.ebi.ac.uk/ols/beta/roadmap.html). As a result, > the rols package is being re-implemented and will undergo changes in > its user interface. The current interface will be maintained for > Bioconductor release 3.2 and will be discontinued afterwards. Please > see the [`rols`](https://github.com/lgatto/rols/) github page for > the new release. ### The Ontology Lookup Service The [Ontology Lookup Service](http://www.ebi.ac.uk/ontology-lookup/) (OLS), developed at the [European Bioinformatics Institute](http://www.ebi.ac.uk/) (EBI), is a unified web interface to query multiple ontologies from a single location. The [new version](http://www.ebi.ac.uk/ols/beta/roadmap.html) of the OLS uses a REST API. The `rols` package uses functionality from the [httr](https://cran.r-project.org/web/packages/httr/) package to query the OLS directly from R. #### Changes in version 1.99.0 See section *Changes in `rols` 2.0* in the [vignette](https://github.com/lgatto/rols/blob/master/vignettes/rols.Rmd). ### The `CVParam` class The `CVParam` S4 class allows to generate controlled vocabulary parameters for all 88 ontologies through the OLS, as used in the frame of the [Proteomics Standards Initiative](http://www.psidev.info/) (PSI) effort. ### Installation `rols` is available from the [Bioconductor](http://www.bioconductor.org) repository. The package and its dependencies can be installed ``` source("http://www.bioconductor.org/biocLite.R") biocLite("rols") ``` See also the `rols` [Bioconductor page](http://bioconductor.org/packages/release/bioc/html/rols.html) for on-line access to the vignette and the reference manual. ### Help * `rols` comes with plenty of documentation. Have a start with the vignette ``vignette("rols", package="rols")``. * Please direct your questions to the [Bioconductor support site](https://support.bioconductor.org/). * For feature requests and bug reports, use [GitHub issues](https://github.com/lgatto/rols/issues)